Variant report

Variant	rs194257
Chromosome Location	chr5:94128715-94128716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs194256	0.99[ASN][1000 genomes]
rs255335	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs255336	0.99[ASN][1000 genomes]
rs255337	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255338	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255340	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255341	0.91[ASN][1000 genomes]
rs255342	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255343	0.93[ASN][1000 genomes]
rs255344	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255345	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255346	0.91[ASN][1000 genomes]
rs255347	0.98[ASN][1000 genomes]
rs255348	0.89[ASN][1000 genomes]
rs255349	0.87[ASN][1000 genomes]
rs255350	0.87[ASN][1000 genomes]
rs255351	0.87[ASN][1000 genomes]
rs255352	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs255376	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7711390	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94106400-94128800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:94122600-94129600	Weak transcription	Adipose Nuclei	Adipose
3	chr5:94122800-94128800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr5:94124600-94131000	Weak transcription	Small Intestine	intestine
5	chr5:94124600-94132200	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:94124800-94129400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:94125600-94128800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr5:94126600-94129000	Weak transcription	Gastric	stomach
9	chr5:94127400-94128800	Strong transcription	HUVEC	blood vessel
10	chr5:94127400-94130000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:94127400-94131600	Enhancers	Thymus	Thymus
12	chr5:94127600-94131600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr5:94127800-94128800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:94127800-94128800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:94127800-94129000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr5:94127800-94130400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:94127800-94131000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr5:94127800-94131000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr5:94127800-94131400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr5:94127800-94131600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr5:94128000-94128800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:94128000-94129200	Flanking Active TSS	Fetal Thymus	thymus
23	chr5:94128000-94130400	Enhancers	Primary hematopoietic stem cells	blood
24	chr5:94128000-94131400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr5:94128000-94131400	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr5:94128000-94131600	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr5:94128000-94131600	Weak transcription	Lung	lung
28	chr5:94128200-94129000	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr5:94128200-94129200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr5:94128200-94130200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr5:94128200-94130200	Enhancers	NHDF-Ad	bronchial
32	chr5:94128200-94130400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr5:94128200-94131600	Enhancers	Primary B cells from peripheral blood	blood
34	chr5:94128400-94128800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr5:94128400-94128800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:94128400-94128800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr5:94128400-94129200	Enhancers	Primary B cells from cord blood	blood
38	chr5:94128400-94129800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr5:94128400-94129800	Flanking Active TSS	Dnd41	blood
40	chr5:94128400-94131400	Enhancers	Primary T cells from cord blood	blood
41	chr5:94128400-94131400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr5:94128400-94131400	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr5:94128600-94128800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:94128600-94128800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
45	chr5:94128600-94129400	Enhancers	NH-A	brain
46	chr5:94128600-94130200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr5:94128600-94130400	Enhancers	Osteobl	bone
48	chr5:94128600-94130800	Enhancers	Muscle Satellite Cultured Cells	--

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