Variant report

Variant	rs255341
Chromosome Location	chr5:94138997-94138998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs153847	0.86[JPT][hapmap]
rs1549177	0.86[CHB][hapmap];0.93[CHD][hapmap]
rs159602	0.87[JPT][hapmap]
rs185308	0.86[CHB][hapmap];0.95[CHD][hapmap]
rs185310	0.86[CHB][hapmap];0.95[CHD][hapmap]
rs194256	0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs194257	0.91[ASN][1000 genomes]
rs255212	0.87[JPT][hapmap]
rs255334	0.86[CHB][hapmap];0.93[CHD][hapmap]
rs255335	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs255336	0.92[ASN][1000 genomes]
rs255337	0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs255338	0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs255340	0.95[CHB][hapmap];0.97[CHD][hapmap];0.92[ASN][1000 genomes]
rs255342	0.90[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs255343	0.94[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs255344	0.91[ASN][1000 genomes]
rs255345	0.91[ASN][1000 genomes]
rs255346	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255347	0.89[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs255348	0.94[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs255349	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs255350	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs255351	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs255352	0.95[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs255353	0.86[CHB][hapmap]
rs255367	0.87[JPT][hapmap]
rs255371	0.90[CHB][hapmap]
rs255375	0.90[CHB][hapmap];0.95[CHD][hapmap]
rs255376	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs4143487	0.87[JPT][hapmap]
rs4869118	0.86[CHB][hapmap];0.93[CHD][hapmap]
rs568600	0.93[JPT][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130200-94161600	Weak transcription	HUVEC	blood vessel
2	chr5:94130400-94141600	Weak transcription	Adipose Nuclei	Adipose
3	chr5:94130400-94145000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:94132200-94139400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:94134200-94141400	Weak transcription	Fetal Thymus	thymus
7	chr5:94134600-94145400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr5:94134600-94164000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr5:94137600-94170400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:94138600-94139600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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