Variant report

Variant	rs255373
Chromosome Location	chr5:94112608-94112609
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1549177	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17084024	0.85[AFR][1000 genomes]
rs185308	0.98[ASN][1000 genomes]
rs185310	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255334	0.94[ASN][1000 genomes]
rs255349	0.83[ASN][1000 genomes]
rs255350	0.83[ASN][1000 genomes]
rs255351	0.83[ASN][1000 genomes]
rs255353	0.91[ASN][1000 genomes]
rs255371	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255374	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs255375	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4869118	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7706425	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs255373	MCTP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94083000-94125800	Weak transcription	HUVEC	blood vessel
3	chr5:94097800-94128400	Weak transcription	Primary T cells from cord blood	blood
4	chr5:94102200-94128000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:94104800-94128000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:94105200-94127800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:94106000-94126000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:94106000-94126000	Weak transcription	Lung	lung
9	chr5:94106400-94128800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:94109800-94114800	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr5:94110000-94115000	Strong transcription	Fetal Thymus	thymus
12	chr5:94110400-94113000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr5:94110800-94113600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr5:94112000-94113400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:94112200-94113600	Enhancers	Fetal Brain Male	brain
16	chr5:94112200-94128600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:94112400-94113400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:94112600-94112800	Weak transcription	Left Ventricle	heart
19	chr5:94112600-94113200	Weak transcription	NHDF-Ad	bronchial
20	chr5:94112600-94114400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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