Variant report

Variant	rs368029726
Chromosome Location	chr6:109646182-109646183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109641011..109643072-chr6:109645120..109647555,2	K562	blood:
2	chr6:109638384..109640553-chr6:109645179..109647068,2	K562	blood:
3	chr6:109645286..109648549-chr6:109701457..109703772,3	K562	blood:
4	chr6:109630124..109632200-chr6:109645326..109646848,2	K562	blood:
5	chr6:109644113..109647625-chr6:109647816..109651076,4	K562	blood:

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction
ENSG00000218632	Chromatin interaction
ENSG00000203799	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5435	chr6:109633035-109669127	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv969434	chr6:109645476-109649777	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109629600-109654000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:109635600-109646600	Weak transcription	HSMMtube	muscle
3	chr6:109637400-109649800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:109640600-109646400	Weak transcription	Brain Angular Gyrus	brain
5	chr6:109640600-109648800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:109640800-109648600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:109641000-109653600	Weak transcription	Small Intestine	intestine
8	chr6:109641800-109647200	Weak transcription	Fetal Intestine Large	intestine
9	chr6:109642000-109647400	Weak transcription	Fetal Intestine Small	intestine
10	chr6:109643400-109646600	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:109643800-109647800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:109644600-109646600	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:109644600-109646600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
15	chr6:109644800-109646600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:109644800-109646600	Weak transcription	Adipose Nuclei	Adipose
17	chr6:109644800-109646600	Weak transcription	Placenta	Placenta
18	chr6:109644800-109657400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:109645000-109646200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:109645200-109646200	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:109645200-109647200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:109645400-109646600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:109645400-109646800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:109645400-109647600	Weak transcription	K562	blood
25	chr6:109645400-109653600	Weak transcription	Spleen	Spleen
26	chr6:109645400-109662400	Weak transcription	Aorta	Aorta
27	chr6:109645600-109646800	Weak transcription	Primary B cells from cord blood	blood
28	chr6:109646000-109646600	Enhancers	Brain Anterior Caudate	brain
29	chr6:109646000-109647000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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