Variant report

Variant	rs368743942
Chromosome Location	chr4:3295700-3295701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:3292471..3295854-chr4:3462941..3467927,8	MCF-7	breast:
2	chr4:3293993..3296488-chr4:3491954..3495229,3	MCF-7	breast:
3	chr4:3294234..3297919-chr4:3387466..3390148,3	MCF-7	breast:
4	chr4:3249484..3252398-chr4:3294414..3296079,2	K562	blood:
5	chr4:3292637..3295776-chr4:3483843..3488274,4	MCF-7	breast:
6	chr4:3292758..3295748-chr4:3341243..3344299,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188981	Chromatin interaction
ENSG00000175920	Chromatin interaction
ENSG00000159788	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv998290	chr4:3176454-3355758	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv878454	chr4:3215835-3305739	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv878455	chr4:3215835-3344891	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv878456	chr4:3215835-3467519	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv428106	chr4:3226182-3752322	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv878458	chr4:3235518-3303976	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv878459	chr4:3235518-3310831	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv878460	chr4:3260154-3303976	Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
11	nsv878461	chr4:3270488-3339038	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv593440	chr4:3283422-3339038	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
13	nsv461165	chr4:3283422-3342137	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
14	nsv593441	chr4:3283422-3342137	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
15	esv3400837	chr4:3293379-3295927	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
16	esv3381315	chr4:3293754-3296077	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
17	esv3372993	chr4:3294704-3297502	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3293200-3295800	Active TSS	H9 Cell Line	embryonic stem cell
2	chr4:3293200-3295800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:3293600-3296000	Active TSS	HSMMtube	muscle
4	chr4:3293600-3297000	Active TSS	Fetal Kidney	kidney
5	chr4:3293800-3295800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:3293800-3295800	Active TSS	HSMM	muscle
7	chr4:3293800-3296000	Active TSS	Rectal Smooth Muscle	rectum
8	chr4:3293800-3296000	Active TSS	A549	lung
9	chr4:3294600-3308800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr4:3295200-3295800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr4:3295200-3295800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:3295200-3295800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr4:3295200-3295800	Active TSS	Primary T killer memory cells from peripheral blood	blood
14	chr4:3295200-3295800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:3295200-3295800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:3295200-3295800	Enhancers	Brain Angular Gyrus	brain
17	chr4:3295200-3295800	Flanking Active TSS	Brain Cingulate Gyrus	brain
18	chr4:3295200-3295800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
19	chr4:3295200-3295800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
20	chr4:3295200-3295800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
21	chr4:3295200-3295800	Flanking Active TSS	Right Ventricle	heart
22	chr4:3295200-3295800	Flanking Active TSS	K562	blood
23	chr4:3295200-3296000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:3295200-3296000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:3295200-3296000	Flanking Active TSS	Adipose Nuclei	Adipose
26	chr4:3295200-3296000	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
27	chr4:3295200-3296000	Flanking Active TSS	Pancreas	Pancrea
28	chr4:3295200-3296000	Flanking Active TSS	Spleen	Spleen
29	chr4:3295200-3296000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr4:3295200-3296000	Flanking Active TSS	NH-A	brain
31	chr4:3295200-3296200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr4:3295200-3296200	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr4:3295200-3296200	Flanking Bivalent TSS/Enh	Dnd41	blood
34	chr4:3295200-3296400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
35	chr4:3295200-3296600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr4:3295200-3296800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr4:3295400-3295800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
38	chr4:3295400-3295800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr4:3295400-3295800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr4:3295400-3295800	Flanking Active TSS	Brain Anterior Caudate	brain
41	chr4:3295400-3295800	Flanking Active TSS	Colonic Mucosa	Colon
42	chr4:3295400-3295800	Flanking Active TSS	Fetal Intestine Large	intestine
43	chr4:3295400-3295800	Flanking Active TSS	Left Ventricle	heart
44	chr4:3295400-3296000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr4:3295400-3296000	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr4:3295400-3296000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
47	chr4:3295400-3296000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:3295400-3296000	Flanking Active TSS	Primary T cells from cord blood	blood
49	chr4:3295400-3296000	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr4:3295400-3296000	Flanking Active TSS	Colon Smooth Muscle	Colon

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