Variant report

Variant	rs368791850
Chromosome Location	chr7:66207148-66207149
allele	-/AA/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr7:66204499-66207187	SK-N-SH	brain:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:66117717..66119604-chr7:66204829..66207389,2	K562	blood:
2	chr7:66204928..66209821-chr7:66213597..66216412,7	MCF-7	breast:
3	chr7:66205946..66208187-chr7:66309676..66311325,2	MCF-7	breast:
4	chr7:66205725..66207353-chr7:66207678..66209182,2	MCF-7	breast:
5	chr7:66144687..66148625-chr7:66203954..66207507,6	K562	blood:
6	chr7:66144717..66148625-chr7:66203954..66207507,5	K562	blood:
7	chr7:66203955..66208659-chr7:66209716..66215353,8	K562	blood:
8	chr7:66118548..66121026-chr7:66205734..66207315,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000272831	TF binding region
ENSG00000230583	Chromatin interaction
ENSG00000271064	Chromatin interaction
ENSG00000226824	Chromatin interaction
ENSG00000154710	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv888328	chr7:66173040-66327654	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv971490	chr7:66192193-66212423	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv970871	chr7:66206610-66210233	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66204200-66208000	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr7:66204400-66207200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:66204400-66207400	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr7:66204400-66207800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:66204600-66207200	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr7:66204600-66207400	Active TSS	HMEC	breast
7	chr7:66204600-66207600	Active TSS	NHDF-Ad	bronchial
8	chr7:66204600-66207800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:66204800-66207400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:66204800-66207600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:66204800-66207600	Active TSS	HSMMtube	muscle
12	chr7:66204800-66207600	Active TSS	NHLF	lung
13	chr7:66204800-66208000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:66205000-66207200	Active TSS	NHEK	skin
15	chr7:66205000-66207400	Active TSS	GM12878-XiMat	blood
16	chr7:66205000-66207400	Active TSS	Hela-S3	cervix
17	chr7:66205000-66207600	Active TSS	Muscle Satellite Cultured Cells	--
18	chr7:66205000-66207600	Active TSS	HSMM	muscle
19	chr7:66205200-66207200	Active TSS	Osteobl	bone
20	chr7:66205200-66207400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:66205200-66207400	Active TSS	NH-A	brain
22	chr7:66205200-66207800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:66205600-66207800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:66206200-66207200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:66206200-66207600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr7:66206400-66207600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:66206400-66208000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:66206400-66216600	Weak transcription	Spleen	Spleen
29	chr7:66206600-66207200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr7:66206600-66207200	Enhancers	Stomach Mucosa	stomach
31	chr7:66206600-66207200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr7:66206600-66207400	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr7:66206600-66207600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr7:66206600-66207600	Active TSS	HepG2	liver
35	chr7:66206600-66208000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr7:66206800-66207600	Enhancers	Brain Substantia Nigra	brain
37	chr7:66206800-66207600	Enhancers	Fetal Brain Male	brain
38	chr7:66206800-66207600	Enhancers	Gastric	stomach
39	chr7:66206800-66207600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr7:66206800-66207600	Enhancers	HUVEC	blood vessel
41	chr7:66206800-66208000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr7:66206800-66208000	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr7:66206800-66208000	Enhancers	Thymus	Thymus
44	chr7:66206800-66208200	Enhancers	Primary T cells fromperipheralblood	blood
45	chr7:66206800-66210600	Weak transcription	Fetal Heart	heart
46	chr7:66206800-66212800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr7:66206800-66213600	Weak transcription	Small Intestine	intestine
48	chr7:66206800-66216400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr7:66206800-66223400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr7:66206800-66232600	Weak transcription	Primary T cells from cord blood	blood

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