Variant report

Variant	rs368965054
Chromosome Location	chr11:66235781-66235782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:66235740-66235890	GM12865	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66190055..66192720-chr11:66235255..66236874,2	K562	blood:
2	chr11:66204104..66208501-chr11:66232741..66235835,4	K562	blood:
3	chr11:66235227..66237987-chr11:66260877..66263080,2	K562	blood:
4	chr11:66233713..66235864-chr11:66383889..66386308,2	MCF-7	breast:
5	chr11:66234037..66235984-chr11:66277120..66279562,2	MCF-7	breast:
6	chr11:66234759..66237082-chr11:66443933..66445576,2	MCF-7	breast:

No data

Variant related genes	Relation type
MRPL11	TF binding region
ENSG00000173914	Chromatin interaction
ENSG00000174483	Chromatin interaction
ENSG00000174547	Chromatin interaction
ENSG00000239306	Chromatin interaction
ENSG00000174576	Chromatin interaction
ENSG00000248643	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
2	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
3	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv832193	chr11:66120339-66278805	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
6	nsv897786	chr11:66203025-66244015	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv468601	chr11:66234023-66296114	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
8	nsv555224	chr11:66234023-66296114	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
9	nsv522277	chr11:66234023-66493825	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66234600-66235800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:66234800-66235800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:66234800-66235800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:66234800-66235800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:66234800-66235800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:66234800-66235800	Flanking Active TSS	Dnd41	blood
7	chr11:66234800-66235800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr11:66235000-66235800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:66235000-66235800	Flanking Active TSS	Fetal Brain Female	brain
10	chr11:66235000-66235800	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr11:66235000-66235800	Flanking Active TSS	HepG2	liver
12	chr11:66235200-66235800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:66235200-66235800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:66235200-66235800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:66235200-66235800	Enhancers	Primary B cells from cord blood	blood
16	chr11:66235200-66235800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:66235200-66235800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr11:66235200-66235800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr11:66235200-66235800	Enhancers	Liver	Liver
20	chr11:66235200-66235800	Enhancers	Esophagus	oesophagus
21	chr11:66235200-66235800	Enhancers	Fetal Thymus	thymus
22	chr11:66235200-66235800	Enhancers	Left Ventricle	heart
23	chr11:66235200-66235800	Enhancers	Right Ventricle	heart
24	chr11:66235200-66235800	Enhancers	Stomach Mucosa	stomach
25	chr11:66235200-66235800	Enhancers	Thymus	Thymus
26	chr11:66235200-66236000	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr11:66235200-66236000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:66235200-66236000	Enhancers	Pancreas	Pancrea
29	chr11:66235200-66236000	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr11:66235200-66236200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:66235200-66236600	Enhancers	Placenta	Placenta
32	chr11:66235200-66237200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr11:66235200-66238200	Weak transcription	Aorta	Aorta
34	chr11:66235200-66238200	Enhancers	Spleen	Spleen
35	chr11:66235200-66239800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr11:66235200-66245000	Weak transcription	HSMM	muscle
37	chr11:66235200-66246200	Weak transcription	Fetal Kidney	kidney
38	chr11:66235400-66235800	Enhancers	H1 Cell Line	embryonic stem cell
39	chr11:66235400-66235800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:66235400-66235800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:66235400-66235800	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr11:66235400-66235800	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:66235400-66235800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:66235400-66235800	Enhancers	Primary B cells from peripheral blood	blood
45	chr11:66235400-66235800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:66235400-66235800	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr11:66235400-66235800	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr11:66235400-66235800	Enhancers	Colonic Mucosa	Colon
49	chr11:66235400-66235800	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr11:66235400-66235800	Enhancers	Fetal Intestine Large	intestine

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