Variant report

Variant	rs369176995
Chromosome Location	chr15:77711159-77711160
allele	-/CATT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:77711150-77711159	HepG2	liver:	n/a	n/a
2	POLR2A	chr15:77710728-77713515	IMR90	lung:	n/a	n/a
3	MAZ	chr15:77710652-77714451	IMR90	lung:	n/a	chr15:77711944-77711954 chr15:77712740-77712750
4	RAD21	chr15:77710639-77712623	IMR90	lung:	n/a	chr15:77711533-77711547
5	POLR2A	chr15:77710478-77711474	HUVEC	blood vessel:	n/a	n/a
6	MTA3	chr15:77710883-77712065	GM12878	blood:	n/a	n/a
7	MXI1	chr15:77710812-77714549	SK-N-SH	brain:	n/a	n/a
8	ZNF263	chr15:77711155-77711948	HEK293-T-REx	kidney:	n/a	chr15:77711547-77711556 chr15:77711536-77711557
9	HCFC1	chr15:77710661-77714679	Hela-S3	cervix:	n/a	n/a
10	GATA3	chr15:77709823-77711753	SK-N-SH	brain:	n/a	chr15:77710536-77710545 chr15:77710536-77710543 chr15:77710536-77710543 chr15:77710536-77710543
11	MXI1	chr15:77710378-77714696	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:77709022..77711510-chr15:77717279..77719349,2	K562	blood:
2	chr15:77695120..77697268-chr15:77709701..77711591,2	K562	blood:
3	chr15:77701664..77703699-chr15:77708996..77711356,2	MCF-7	breast:
4	chr15:77688577..77690434-chr15:77709040..77711857,2	K562	blood:

Variant related genes	Relation type
HMG20A	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv482689	chr15:77576396-77731559	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv21291	chr15:77707945-77712363	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3422226	chr15:77710922-77713870	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77698600-77711200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:77703000-77711400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:77708200-77711400	Weak transcription	Gastric	stomach
4	chr15:77708200-77711400	Weak transcription	Pancreas	Pancrea
5	chr15:77708200-77711400	Weak transcription	Spleen	Spleen
6	chr15:77708400-77711200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr15:77708800-77711200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr15:77709000-77711200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:77709400-77711400	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr15:77709400-77711600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:77709600-77711200	Flanking Active TSS	HUVEC	blood vessel
12	chr15:77709600-77712600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:77709600-77713800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:77709800-77711400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr15:77710000-77711200	Flanking Active TSS	Fetal Lung	lung
16	chr15:77710000-77711200	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr15:77710000-77711200	Flanking Active TSS	NH-A	brain
18	chr15:77710000-77711400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:77710000-77711400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:77710200-77711400	Weak transcription	Small Intestine	intestine
21	chr15:77710200-77711600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr15:77710200-77713600	Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr15:77710200-77714400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:77710200-77714400	Active TSS	Right Atrium	heart
25	chr15:77710400-77711200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr15:77710400-77711200	Enhancers	Primary T cells from cord blood	blood
27	chr15:77710400-77711600	Flanking Active TSS	Brain Anterior Caudate	brain
28	chr15:77710400-77713800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:77710400-77714400	Active TSS	Right Ventricle	heart
30	chr15:77710400-77714400	Active TSS	NHDF-Ad	bronchial
31	chr15:77710400-77714600	Active TSS	NHLF	lung
32	chr15:77710600-77711200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr15:77710600-77711200	Flanking Active TSS	Brain Cingulate Gyrus	brain
34	chr15:77710600-77711200	Flanking Active TSS	Fetal Heart	heart
35	chr15:77710600-77711400	Flanking Active TSS	Fetal Intestine Small	intestine
36	chr15:77710600-77711600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:77710600-77711600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:77710600-77711800	Flanking Active TSS	Dnd41	blood
39	chr15:77710600-77713600	Active TSS	HSMMtube	muscle
40	chr15:77710600-77713800	Active TSS	Colon Smooth Muscle	Colon
41	chr15:77710600-77713800	Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr15:77710600-77714200	Active TSS	H1 Cell Line	embryonic stem cell
43	chr15:77710600-77714200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:77710600-77714600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:77710800-77711200	Enhancers	Primary B cells from cord blood	blood
46	chr15:77710800-77711200	Enhancers	Primary B cells from peripheral blood	blood
47	chr15:77710800-77711200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
48	chr15:77710800-77711200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr15:77710800-77711200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr15:77710800-77711200	Flanking Active TSS	Brain Angular Gyrus	brain

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