Variant report

Variant	rs369600034
Chromosome Location	chr6:35291122-35291123
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35285224..35287896-chr6:35288768..35291223,2	MCF-7	breast:
2	chr6:35289938..35291662-chr6:35465459..35467668,2	K562	blood:
3	chr6:35288573..35291494-chr6:35419132..35420962,2	K562	blood:

Variant related genes	Relation type
ENSG00000112039	Chromatin interaction
ENSG00000023892	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv602907	chr6:35285720-35312267	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv528424	chr6:35289446-35292204	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35276000-35293800	Weak transcription	K562	blood
2	chr6:35280800-35293200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:35281600-35291600	Strong transcription	Primary B cells from peripheral blood	blood
4	chr6:35282000-35293400	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:35282000-35293600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:35282000-35293800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:35282200-35293600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr6:35282600-35293600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:35282800-35293600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:35283400-35293400	Strong transcription	Primary B cells from cord blood	blood
11	chr6:35283800-35293400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:35284000-35291600	Strong transcription	Dnd41	blood
13	chr6:35284000-35293000	Strong transcription	Primary T cells from cord blood	blood
14	chr6:35284000-35293400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:35284200-35293400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:35284400-35292800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:35284400-35293600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:35285200-35292800	Strong transcription	Thymus	Thymus
19	chr6:35285400-35293400	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:35285600-35291400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:35285800-35293000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr6:35286000-35293600	Strong transcription	Fetal Thymus	thymus
23	chr6:35286600-35310000	Weak transcription	Right Atrium	heart
24	chr6:35286800-35292200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:35286800-35292600	Weak transcription	Colonic Mucosa	Colon
26	chr6:35286800-35293400	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr6:35286800-35294800	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:35286800-35295000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr6:35286800-35295000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:35286800-35295200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr6:35286800-35295200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:35286800-35299800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr6:35286800-35299800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:35287200-35293200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:35287200-35293400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:35287600-35291400	Strong transcription	Spleen	Spleen
37	chr6:35287600-35295000	Weak transcription	HepG2	liver
38	chr6:35287800-35293400	Weak transcription	Gastric	stomach
39	chr6:35287800-35295200	Weak transcription	Fetal Intestine Large	intestine
40	chr6:35287800-35295200	Weak transcription	Pancreas	Pancrea
41	chr6:35289400-35294200	Weak transcription	HMEC	breast
42	chr6:35289400-35295200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:35289600-35292800	Weak transcription	Fetal Stomach	stomach
44	chr6:35289600-35292800	Weak transcription	Lung	lung
45	chr6:35289600-35293400	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr6:35289600-35295200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:35289600-35299800	Weak transcription	Esophagus	oesophagus
48	chr6:35290000-35293400	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:35290200-35299800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:35290400-35293200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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