Variant report

Variant	rs369623036
Chromosome Location	chr6:166720466-166720467
allele	-/AGG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166719852..166722547-chr6:166755922..166758056,2	K562	blood:

Variant related genes	Relation type
ENSG00000198818	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv886935	chr6:166704744-166726566	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886936	chr6:166714024-166731289	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3356004	chr6:166719787-166722335	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv823927	chr6:166719837-166722561	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3421182	chr6:166720387-166722935	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166718800-166722600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr6:166719200-166722400	Active TSS	Brain Substantia Nigra	brain
3	chr6:166719400-166722400	Active TSS	Brain Cingulate Gyrus	brain
4	chr6:166719800-166720600	Enhancers	Liver	Liver
5	chr6:166719800-166720800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
6	chr6:166719800-166722400	Bivalent Enhancer	Fetal Brain Male	brain
7	chr6:166720000-166720600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
8	chr6:166720000-166720600	Bivalent Enhancer	Fetal Brain Female	brain
9	chr6:166720000-166720800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:166720000-166720800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
11	chr6:166720000-166720800	Bivalent Enhancer	Fetal Lung	lung
12	chr6:166720200-166720600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:166720200-166720600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:166720200-166720600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
15	chr6:166720200-166720600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
16	chr6:166720200-166720600	Bivalent Enhancer	Colonic Mucosa	Colon
17	chr6:166720200-166720600	Enhancers	Pancreas	Pancrea
18	chr6:166720200-166720800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
19	chr6:166720200-166720800	Bivalent Enhancer	Lung	lung
20	chr6:166720200-166721000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr6:166720200-166721000	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:166720200-166722000	Active TSS	GM12878-XiMat	blood
23	chr6:166720200-166722200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
24	chr6:166720200-166722400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:166720400-166720600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
26	chr6:166720400-166720600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:166720400-166720600	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:166720400-166720600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
29	chr6:166720400-166720600	Bivalent Enhancer	Primary B cells from cord blood	blood
30	chr6:166720400-166720600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
31	chr6:166720400-166720600	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
32	chr6:166720400-166720600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
33	chr6:166720400-166720600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
34	chr6:166720400-166720600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:166720400-166720600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:166720400-166720600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:166720400-166720600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:166720400-166720600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
39	chr6:166720400-166720600	Bivalent/Poised TSS	Esophagus	oesophagus
40	chr6:166720400-166720600	Bivalent Enhancer	Fetal Intestine Large	intestine
41	chr6:166720400-166720600	Enhancers	Gastric	stomach
42	chr6:166720400-166720600	Bivalent/Poised TSS	Ovary	ovary
43	chr6:166720400-166720600	Bivalent Enhancer	Stomach Mucosa	stomach
44	chr6:166720400-166720600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
45	chr6:166720400-166720600	Bivalent Enhancer	HepG2	liver
46	chr6:166720400-166720800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
47	chr6:166720400-166720800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
48	chr6:166720400-166720800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:166720400-166720800	Flanking Bivalent TSS/Enh	Right Ventricle	heart
50	chr6:166720400-166721000	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood

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