Variant report

Variant	rs369896924
Chromosome Location	chr11:8830412-8830413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8708349..8711473-chr11:8829326..8831114,3	K562	blood:
2	chr11:8706888..8711251-chr11:8829326..8831400,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM66-7	chr11:8829373-8832882	NONHSAT017885

Variant related genes	Relation type
ENSG00000212607	Chromatin interaction
ENSG00000166441	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv527920	chr11:8816695-8856822	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv527073	chr11:8829168-8848463	Flanking Active TSS Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8811800-8830600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:8816400-8831800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:8816600-8830600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:8826400-8830600	Enhancers	Brain Angular Gyrus	brain
5	chr11:8827400-8831200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:8827600-8830600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:8827600-8831000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr11:8827800-8830800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:8828000-8830800	Enhancers	Brain Germinal Matrix	brain
10	chr11:8828200-8831000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:8828400-8831000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:8828600-8830600	Enhancers	Fetal Intestine Small	intestine
13	chr11:8828600-8830800	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
14	chr11:8828600-8830800	Flanking Active TSS	Stomach Mucosa	stomach
15	chr11:8828600-8830800	Flanking Active TSS	HMEC	breast
16	chr11:8828600-8831000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr11:8828600-8831200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:8828600-8831200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:8828600-8831200	Flanking Active TSS	HSMMtube	muscle
20	chr11:8828600-8831200	Flanking Active TSS	NHEK	skin
21	chr11:8828600-8831400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr11:8828600-8831400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr11:8828800-8830600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:8828800-8830800	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr11:8828800-8831000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:8828800-8831600	Enhancers	Fetal Thymus	thymus
27	chr11:8828800-8831600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
28	chr11:8828800-8833200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:8829000-8830800	Enhancers	Fetal Lung	lung
30	chr11:8829000-8831200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:8829000-8831400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:8829000-8831600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:8829000-8832200	Flanking Active TSS	Osteobl	bone
34	chr11:8829000-8832800	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr11:8829200-8831400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:8829400-8830800	Flanking Active TSS	Ovary	ovary
37	chr11:8829400-8831200	Flanking Active TSS	NHLF	lung
38	chr11:8829400-8831400	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:8829400-8832000	Flanking Active TSS	Brain Hippocampus Middle	brain
40	chr11:8829400-8832800	Genic enhancers	Placenta	Placenta
41	chr11:8829400-8833000	Flanking Active TSS	NH-A	brain
42	chr11:8829600-8830600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:8829600-8830800	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr11:8829600-8831000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
45	chr11:8829600-8831000	Enhancers	HepG2	liver
46	chr11:8829600-8831200	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr11:8829600-8831400	Weak transcription	Liver	Liver
48	chr11:8829800-8830600	Enhancers	Fetal Kidney	kidney
49	chr11:8829800-8830600	Flanking Active TSS	Stomach Smooth Muscle	stomach
50	chr11:8829800-8830800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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