Variant report

Variant	rs370479908
Chromosome Location	chr12:121401801-121401802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121401463..121403474-chr12:121406949..121408762,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1037070	chr12:121069938-121459047	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv899559	chr12:121324727-121592689	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	esv1838192	chr12:121363589-121402932	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv899560	chr12:121371233-121560581	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv899561	chr12:121376416-121525591	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv899562	chr12:121376416-121565870	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
8	esv3493151	chr12:121401525-121402069	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3423607	chr12:121401535-121402057	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3487168	chr12:121401541-121402054	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3487169	chr12:121401541-121402054	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3330163	chr12:121401550-121402046	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3493129	chr12:121401610-121402009	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3493140	chr12:121401629-121402036	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3493162	chr12:121401685-121401982	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121394600-121408200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:121395800-121408200	Weak transcription	Fetal Kidney	kidney
3	chr12:121397600-121406800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr12:121397800-121405400	Weak transcription	Pancreas	Pancrea
5	chr12:121399600-121403200	Weak transcription	Thymus	Thymus
6	chr12:121400000-121402200	Weak transcription	Esophagus	oesophagus
7	chr12:121400000-121405400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr12:121400000-121406600	Weak transcription	Gastric	stomach
9	chr12:121400400-121404800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr12:121400600-121403200	Weak transcription	Stomach Mucosa	stomach
11	chr12:121400600-121403400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr12:121400600-121404800	Weak transcription	Fetal Intestine Large	intestine
13	chr12:121400600-121416000	Weak transcription	Small Intestine	intestine
14	chr12:121400800-121403600	Weak transcription	Colonic Mucosa	Colon
15	chr12:121400800-121406600	Weak transcription	A549	lung
16	chr12:121400800-121406600	Weak transcription	HepG2	liver
17	chr12:121401000-121402200	Weak transcription	Fetal Intestine Small	intestine
18	chr12:121401400-121403400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr12:121401600-121403600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr12:121401600-121406600	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links