Variant report

Variant	rs370485207
Chromosome Location	chr19:36211026-36211027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36207787..36211113-chr19:36265053..36268029,3	K562	blood:
2	chr19:36208210..36211144-chr19:36264877..36267691,4	MCF-7	breast:
3	chr19:36207379..36214815-chr19:36234227..36241330,25	MCF-7	breast:
4	chr19:36205476..36213390-chr19:36226310..36233646,27	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126246	Chromatin interaction
ENSG00000161265	Chromatin interaction
ENSG00000188223	Chromatin interaction
ENSG00000267120	Chromatin interaction
ENSG00000267796	Chromatin interaction
ENSG00000267439	Chromatin interaction
ENSG00000205155	Chromatin interaction
ENSG00000004777	Chromatin interaction
ENSG00000105663	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911630	chr19:36149761-36290977	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
3	nsv458566	chr19:36156588-36265508	Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv579422	chr19:36156588-36265508	Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
5	nsv911631	chr19:36169285-36290977	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
6	nsv911632	chr19:36174176-36288297	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
7	nsv911633	chr19:36206050-36283847	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
8	nsv911634	chr19:36206050-36290977	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
9	nsv543996	chr19:36210269-36265431	Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
10	nsv1057830	chr19:36210269-36279794	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
11	nsv543997	chr19:36210269-36279794	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36210000-36211200	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr19:36210000-36211400	Weak transcription	Aorta	Aorta
3	chr19:36210000-36212800	Genic enhancers	Spleen	Spleen
4	chr19:36210200-36211200	Genic enhancers	Fetal Stomach	stomach
5	chr19:36210200-36211400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr19:36210200-36211800	Genic enhancers	Placenta	Placenta
7	chr19:36210200-36212400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr19:36210400-36211200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr19:36210400-36211200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr19:36210400-36211200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr19:36210400-36211200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr19:36210400-36212800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr19:36210400-36213400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr19:36210400-36213400	Weak transcription	HSMMtube	muscle
15	chr19:36210400-36213800	Genic enhancers	Stomach Smooth Muscle	stomach
16	chr19:36210400-36215400	Weak transcription	Psoas Muscle	Psoas
17	chr19:36210400-36215600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr19:36210600-36211200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr19:36210600-36211200	Enhancers	Liver	Liver
20	chr19:36210600-36211200	Weak transcription	Brain Anterior Caudate	brain
21	chr19:36210600-36211200	Genic enhancers	Duodenum Smooth Muscle	Duodenum
22	chr19:36210600-36211400	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr19:36210600-36211400	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr19:36210600-36211400	Genic enhancers	Fetal Brain Female	brain
25	chr19:36210600-36211400	Strong transcription	Hela-S3	cervix
26	chr19:36210600-36211600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr19:36210600-36211600	Weak transcription	Primary B cells from cord blood	blood
28	chr19:36210600-36211600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr19:36210600-36211800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr19:36210600-36212200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr19:36210600-36212200	Weak transcription	Brain Substantia Nigra	brain
32	chr19:36210600-36212200	Weak transcription	HUVEC	blood vessel
33	chr19:36210600-36212600	Genic enhancers	Pancreas	Pancrea
34	chr19:36210600-36212600	Weak transcription	HSMM	muscle
35	chr19:36210600-36212800	Strong transcription	K562	blood
36	chr19:36210600-36213600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr19:36210600-36213600	Weak transcription	Fetal Kidney	kidney
38	chr19:36210600-36214200	Weak transcription	NH-A	brain
39	chr19:36210600-36215400	Weak transcription	NHDF-Ad	bronchial
40	chr19:36210600-36222400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr19:36210600-36223000	Strong transcription	Fetal Lung	lung
42	chr19:36210600-36223000	Strong transcription	Rectal Smooth Muscle	rectum
43	chr19:36210600-36223400	Strong transcription	Primary T cells from cord blood	blood
44	chr19:36210600-36230000	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr19:36210600-36230200	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr19:36210600-36230200	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr19:36210600-36230200	Strong transcription	Ovary	ovary
48	chr19:36210600-36230200	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr19:36210600-36230400	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr19:36210600-36230400	Strong transcription	A549	lung

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