Variant report

Variant	rs370734342
Chromosome Location	chr5:179085462-179085463
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:179047959..179050192-chr5:179084037..179087067,3	K562	blood:
2	chr5:179048487..179050192-chr5:179084037..179087067,3	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC136604.1-1	chr5:179085266-179085482	XLOC_004677
2	lnc-AC136604.1-1	chr5:179085079-179085482	XLOC_004677
3	lnc-AC136604.1-1	chr5:179085390-179085482	XLOC_004677
4	lnc-AC136604.1-1	chr5:179085237-179085482	XLOC_004677

No data

Variant related genes	Relation type
ENSG00000169045	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949554	chr5:178832325-179309513	Transcr. at gene 5' and 3' Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	312 gene(s)	inside rSNPs	diseases
2	nsv883270	chr5:178951106-179350387	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	312 gene(s)	inside rSNPs	diseases
3	nsv830560	chr5:179039212-179175758	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
4	nsv883273	chr5:179045142-179086833	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
5	nsv1033352	chr5:179056475-179086482	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1021275	chr5:179056475-179104588	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1022780	chr5:179061394-179086482	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1017006	chr5:179064433-179086482	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv1031352	chr5:179082461-179104588	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179084600-179085600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:179084600-179085600	Active TSS	Duodenum Mucosa	Duodenum
3	chr5:179084600-179085600	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr5:179084600-179085600	Active TSS	HepG2	liver
5	chr5:179084600-179086000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:179084600-179086200	Active TSS	Fetal Brain Female	brain
7	chr5:179084800-179085600	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr5:179084800-179085600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:179084800-179085600	Active TSS	Colonic Mucosa	Colon
10	chr5:179084800-179085600	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr5:179084800-179085600	Active TSS	Fetal Stomach	stomach
12	chr5:179084800-179085600	Active TSS	Left Ventricle	heart
13	chr5:179084800-179085600	Active TSS	A549	lung
14	chr5:179084800-179085800	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr5:179084800-179085800	Active TSS	H9 Cell Line	embryonic stem cell
16	chr5:179084800-179085800	Active TSS	Brain Substantia Nigra	brain
17	chr5:179084800-179085800	Active TSS	Colon Smooth Muscle	Colon
18	chr5:179084800-179085800	Active TSS	NHDF-Ad	bronchial
19	chr5:179084800-179086000	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr5:179084800-179086000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:179084800-179086000	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr5:179084800-179086000	Active TSS	Pancreas	Pancrea
23	chr5:179084800-179086000	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr5:179084800-179086000	Active TSS	Rectal Smooth Muscle	rectum
25	chr5:179084800-179086000	Active TSS	Right Atrium	heart
26	chr5:179084800-179086000	Active TSS	Stomach Smooth Muscle	stomach
27	chr5:179084800-179086000	Active TSS	Osteobl	bone
28	chr5:179084800-179086200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr5:179084800-179086200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:179084800-179086400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr5:179085400-179085600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr5:179085400-179085600	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr5:179085400-179085600	Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr5:179085400-179085600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr5:179085400-179085600	Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr5:179085400-179085600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr5:179085400-179085600	Active TSS	Primary B cells from cord blood	blood
38	chr5:179085400-179085600	Active TSS	Primary hematopoietic stem cells	blood
39	chr5:179085400-179085600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
40	chr5:179085400-179085600	Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr5:179085400-179085600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr5:179085400-179085600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
43	chr5:179085400-179085600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr5:179085400-179085600	Active TSS	Fetal Brain Male	brain
45	chr5:179085400-179085600	Active TSS	Fetal Heart	heart
46	chr5:179085400-179085600	Active TSS	Fetal Intestine Large	intestine
47	chr5:179085400-179085600	Active TSS	Fetal Lung	lung
48	chr5:179085400-179085600	Active TSS	Fetal Thymus	thymus
49	chr5:179085400-179085600	Active TSS	Ovary	ovary
50	chr5:179085400-179085600	Active TSS	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links