Variant report

Variant	rs371204404
Chromosome Location	chr6:36935038-36935039
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36930754..36936310-chr6:36950773..36956274,7	MCF-7	breast:
2	chr6:36856253..36859191-chr6:36932885..36935045,2	K562	blood:
3	chr6:36853681..36855481-chr6:36934818..36937310,2	K562	blood:
4	chr6:36934586..36938326-chr6:36939684..36941889,3	MCF-7	breast:
5	chr6:36934908..36939247-chr6:36952489..36955593,6	MCF-7	breast:
6	chr6:36903375..36906327-chr6:36934903..36936989,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv885815	chr6:36915906-36979583	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv525288	chr6:36934244-36937647	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36928200-36935200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:36928600-36935400	Weak transcription	Small Intestine	intestine
3	chr6:36929000-36935200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:36929000-36935400	Weak transcription	Ovary	ovary
5	chr6:36929000-36935400	Weak transcription	A549	lung
6	chr6:36929400-36935200	Weak transcription	K562	blood
7	chr6:36929600-36936800	Weak transcription	Hela-S3	cervix
8	chr6:36931400-36935600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:36931600-36935200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:36931600-36935200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:36931600-36935200	Weak transcription	HMEC	breast
12	chr6:36931600-36935400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:36931600-36935400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:36931600-36936200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:36931600-36938600	Weak transcription	Fetal Brain Male	brain
16	chr6:36931800-36935600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:36931800-36948600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:36932000-36935200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:36932200-36935400	Weak transcription	GM12878-XiMat	blood
20	chr6:36932400-36946800	Strong transcription	Fetal Brain Female	brain
21	chr6:36932400-36951800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:36932600-36936200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:36932800-36947400	Strong transcription	Fetal Stomach	stomach
24	chr6:36933000-36935400	Weak transcription	Fetal Kidney	kidney
25	chr6:36933000-36935600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr6:36933000-36936400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:36933200-36935200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:36933200-36935200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:36933200-36935200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:36933200-36935200	Weak transcription	Fetal Heart	heart
31	chr6:36933200-36935200	Weak transcription	Right Ventricle	heart
32	chr6:36933200-36935400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:36933200-36936000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:36933200-36936000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:36933200-36936200	Strong transcription	Fetal Muscle Leg	muscle
36	chr6:36933200-36936200	Weak transcription	Right Atrium	heart
37	chr6:36933200-36937200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr6:36933800-36938200	Strong transcription	Fetal Thymus	thymus
39	chr6:36933800-36940400	Strong transcription	Adipose Nuclei	Adipose
40	chr6:36933800-36946800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:36933800-36946800	Strong transcription	Brain Anterior Caudate	brain
42	chr6:36933800-36947200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:36934000-36936000	Weak transcription	Psoas Muscle	Psoas
44	chr6:36934000-36937200	Strong transcription	HSMM	muscle
45	chr6:36934000-36940600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:36934000-36941000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:36934000-36946600	Strong transcription	Thymus	Thymus
48	chr6:36934000-36946800	Strong transcription	Primary T cells from cord blood	blood
49	chr6:36934000-36946800	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr6:36934000-36946800	Strong transcription	Colon Smooth Muscle	Colon

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