Variant report

Variant	rs371896771
Chromosome Location	chr1:209880447-209880448
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209879551..209882258-chr1:209882693..209884984,3	K562	blood:
2	chr1:209873397..209875484-chr1:209878580..209881106,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873139	chr1:209828955-210050794	Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1004343	chr1:209879304-209909385	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209875200-209882400	Enhancers	Brain Substantia Nigra	brain
2	chr1:209877400-209882600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:209878400-209880800	Weak transcription	Brain Germinal Matrix	brain
4	chr1:209878400-209881800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:209878600-209881200	Weak transcription	Brain Anterior Caudate	brain
6	chr1:209878600-209881400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:209878600-209888200	Weak transcription	Brain Angular Gyrus	brain
8	chr1:209878800-209893400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:209879000-209881400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr1:209879400-209880800	Weak transcription	Brain Hippocampus Middle	brain
11	chr1:209879400-209881000	Weak transcription	Adipose Nuclei	Adipose
12	chr1:209879600-209880600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:209880000-209880600	Enhancers	Gastric	stomach
14	chr1:209880000-209881000	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:209880000-209881200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:209880000-209881400	Enhancers	HMEC	breast
17	chr1:209880200-209881000	Enhancers	HUVEC	blood vessel
18	chr1:209880200-209881400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:209880200-209881400	Enhancers	NHEK	skin
20	chr1:209880200-209881800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:209880400-209880600	Transcr. at gene 5' and 3'	Liver	Liver
22	chr1:209880400-209881000	Enhancers	NHLF	lung

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