Variant report

Variant nsv1004343
Chromosome Location chr1:209879304-209909385
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:287 , 50 per page) page: 1 2 3 4 5 6
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:209870800-209880000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:209870800-209880200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr1:209875200-209882400 Enhancers Brain Substantia Nigra brain
4 chr1:209877400-209882600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr1:209878200-209879400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
6 chr1:209878400-209880800 Weak transcription Brain Germinal Matrix brain
7 chr1:209878400-209881800 Weak transcription Breast Myoepithelial Primary Cells Breast
8 chr1:209878600-209879400 Enhancers Brain Hippocampus Middle brain
9 chr1:209878600-209881200 Weak transcription Brain Anterior Caudate brain
10 chr1:209878600-209881400 Weak transcription Brain Inferior Temporal Lobe brain
11 chr1:209878600-209888200 Weak transcription Brain Angular Gyrus brain
12 chr1:209878800-209880400 Weak transcription NHLF lung
13 chr1:209878800-209893400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr1:209879000-209881400 Weak transcription Brain Cingulate Gyrus brain
15 chr1:209879200-209879400 Enhancers Adipose Nuclei Adipose
16 chr1:209879200-209879600 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr1:209879200-209879600 Weak transcription Ovary ovary
18 chr1:209879200-209880400 Flanking Active TSS Liver Liver
19 chr1:209879400-209880000 Transcr. at gene 5' and 3' Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr1:209879400-209880800 Weak transcription Brain Hippocampus Middle brain
21 chr1:209879400-209881000 Weak transcription Adipose Nuclei Adipose
22 chr1:209879600-209880600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr1:209880000-209880600 Enhancers Gastric stomach
24 chr1:209880000-209881000 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr1:209880000-209881200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr1:209880000-209881400 Enhancers HMEC breast
27 chr1:209880200-209881000 Enhancers HUVEC blood vessel
28 chr1:209880200-209881400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr1:209880200-209881400 Enhancers NHEK skin
30 chr1:209880200-209881800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr1:209880400-209880600 Transcr. at gene 5' and 3' Liver Liver
32 chr1:209880400-209881000 Enhancers NHLF lung
33 chr1:209880600-209881200 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:209880600-209883800 Genic enhancers Liver Liver
35 chr1:209880800-209882200 Enhancers Brain Germinal Matrix brain
36 chr1:209880800-209882400 Enhancers Brain Hippocampus Middle brain
37 chr1:209881000-209883200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:209881000-209885200 Weak transcription HUVEC blood vessel
39 chr1:209881200-209881800 Enhancers Brain Anterior Caudate brain
40 chr1:209881200-209882800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr1:209881200-209886000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr1:209881400-209882600 Enhancers Brain Cingulate Gyrus brain
43 chr1:209881400-209883000 Enhancers Brain Inferior Temporal Lobe brain
44 chr1:209881400-209883600 Weak transcription NHEK skin
45 chr1:209881400-209884600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr1:209881400-209887200 Weak transcription HMEC breast
47 chr1:209881600-209882000 Bivalent Enhancer Cortex derived primary cultured neurospheres brain
48 chr1:209881600-209882000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
49 chr1:209881800-209882000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr1:209881800-209882200 Enhancers Breast Myoepithelial Primary Cells Breast

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