Variant report

Variant	rs543629047
Chromosome Location	chr1:209879388-209879389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873139	chr1:209828955-210050794	Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1004343	chr1:209879304-209909385	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209870800-209880000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:209870800-209880200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:209875200-209882400	Enhancers	Brain Substantia Nigra	brain
4	chr1:209877400-209882600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:209878200-209879400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:209878400-209880800	Weak transcription	Brain Germinal Matrix	brain
7	chr1:209878400-209881800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:209878600-209879400	Enhancers	Brain Hippocampus Middle	brain
9	chr1:209878600-209881200	Weak transcription	Brain Anterior Caudate	brain
10	chr1:209878600-209881400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:209878600-209888200	Weak transcription	Brain Angular Gyrus	brain
12	chr1:209878800-209880400	Weak transcription	NHLF	lung
13	chr1:209878800-209893400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:209879000-209881400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:209879200-209879400	Enhancers	Adipose Nuclei	Adipose
16	chr1:209879200-209879600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:209879200-209879600	Weak transcription	Ovary	ovary
18	chr1:209879200-209880400	Flanking Active TSS	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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