Variant report

Variant	rs372426287
Chromosome Location	chr15:83621872-83621873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr15:83621704-83622093	HEK293-T-REx	kidney:	n/a	chr15:83621913-83621934
2	NFIC	chr15:83621424-83622072	SK-N-SH	brain:	n/a	n/a
3	NRF1	chr15:83621137-83622158	SK-N-SH	brain:	n/a	chr15:83621260-83621269 chr15:83621249-83621258 chr15:83621337-83621346
4	ZBTB7A	chr15:83621348-83621977	ECC-1	luminal epithelium:	n/a	n/a
5	CEBPB	chr15:83621397-83621930	A549	lung:	n/a	n/a
6	MAX	chr15:83620809-83621892	MCF-7	breast:	n/a	chr15:83621112-83621122 chr15:83621701-83621710 chr15:83621591-83621601
7	NFIC	chr15:83621433-83621946	SK-N-SH	brain:	n/a	n/a
8	NFIC	chr15:83620849-83622062	ECC-1	luminal epithelium:	n/a	n/a
9	HA-E2F1	chr15:83620444-83621975	MCF-7	breast:	n/a	chr15:83621691-83621700 chr15:83621676-83621686 chr15:83621402-83621412
10	MAX	chr15:83620823-83621963	H1-hESC	embryonic stem cell:	n/a	chr15:83621112-83621122 chr15:83621701-83621710 chr15:83621591-83621601
11	POLR2A	chr15:83621596-83621919	H1-hESC	embryonic stem cell:	n/a	n/a
12	TCF12	chr15:83621410-83622046	ECC-1	luminal epithelium:	n/a	n/a
13	MAX	chr15:83620745-83622027	A549	lung:	n/a	chr15:83621112-83621122 chr15:83621701-83621710 chr15:83621591-83621601
14	NFIC	chr15:83621359-83622135	ECC-1	luminal epithelium:	n/a	n/a
15	ZBTB7A	chr15:83621362-83621922	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83620495..83623262-chr15:83678706..83680302,2	MCF-7	breast:
2	chr15:83619377..83622023-chr15:83652376..83655486,3	MCF-7	breast:

Variant related genes	Relation type
HOMER2	TF binding region
ENSG00000103942	Chromatin interaction
ENSG00000169612	Chromatin interaction
ENSG00000169609	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv3361256	chr15:83620373-83622921	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3332267	chr15:83620548-83622646	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83618800-83622000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr15:83619400-83622000	Active TSS	Fetal Kidney	kidney
3	chr15:83619800-83622200	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr15:83620000-83622000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
5	chr15:83620200-83622200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr15:83620200-83622200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:83620400-83622000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:83620400-83622000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
9	chr15:83620400-83622000	Active TSS	Brain Substantia Nigra	brain
10	chr15:83620400-83622200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr15:83620600-83622000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:83620600-83622000	Active TSS	Psoas Muscle	Psoas
13	chr15:83620600-83622000	Active TSS	Spleen	Spleen
14	chr15:83620600-83622000	Active TSS	Osteobl	bone
15	chr15:83620600-83622200	Active TSS	H9 Cell Line	embryonic stem cell
16	chr15:83620600-83622200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
17	chr15:83620600-83622200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr15:83620600-83622200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
19	chr15:83620600-83622200	Active TSS	Colon Smooth Muscle	Colon
20	chr15:83620800-83622000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr15:83620800-83622000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr15:83620800-83622000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:83620800-83622000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
24	chr15:83620800-83622000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
25	chr15:83620800-83622000	Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr15:83620800-83622000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr15:83620800-83622000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:83620800-83622000	Active TSS	Fetal Intestine Small	intestine
29	chr15:83620800-83622000	Active TSS	HSMMtube	muscle
30	chr15:83620800-83622200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr15:83620800-83622200	Active TSS	Brain Cingulate Gyrus	brain
32	chr15:83621000-83622000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:83621000-83622000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:83621000-83622000	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
35	chr15:83621000-83622000	Active TSS	Fetal Brain Female	brain
36	chr15:83621000-83622000	Bivalent/Poised TSS	Fetal Stomach	stomach
37	chr15:83621000-83622000	Active TSS	NHEK	skin
38	chr15:83621000-83622200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
39	chr15:83621000-83622200	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr15:83621000-83622400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:83621200-83622000	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr15:83621200-83622000	Active TSS	Brain Hippocampus Middle	brain
43	chr15:83621200-83622000	Active TSS	Lung	lung
44	chr15:83621200-83622000	Bivalent/Poised TSS	Thymus	Thymus
45	chr15:83621200-83622000	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
46	chr15:83621200-83622200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr15:83621600-83622000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
48	chr15:83621600-83622000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr15:83621600-83622000	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr15:83621600-83622000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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