Variant report

Variant	esv3361256
Chromosome Location	chr15:83620373-83622921
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr15:83621608-83621841	H1-hESC	embryonic stem cell:	n/a	n/a
2	BHLHE40	chr15:83621302-83621571	HepG2	liver:	n/a	chr15:83621340-83621356 chr15:83621351-83621367
3	BRCA1	chr15:83621099-83621119	H1-hESC	embryonic stem cell:	n/a	n/a
4	CEBPB	chr15:83621516-83621752	H1-hESC	embryonic stem cell:	n/a	n/a
5	CEBPB	chr15:83621518-83621651	HepG2	liver:	n/a	n/a
6	CEBPB	chr15:83621335-83621801	MCF-7	breast:	n/a	n/a
7	CEBPB	chr15:83621397-83621930	A549	lung:	n/a	n/a
8	CEBPB	chr15:83621359-83621842	ECC-1	luminal epithelium:	n/a	n/a
9	CEBPD	chr15:83621440-83621632	HepG2	liver:	n/a	n/a
10	CEBPD	chr15:83621362-83621622	HepG2	liver:	n/a	n/a
11	CHD1	chr15:83620827-83620987	H1-hESC	embryonic stem cell:	n/a	n/a
12	CHD2	chr15:83621655-83621666	HepG2	liver:	n/a	n/a
13	CTBP2	chr15:83620873-83621696	H1-hESC	embryonic stem cell:	n/a	n/a
14	CTCF	chr15:83621000-83621150	SK-N-SH_RA	brain:	n/a	chr15:83621106-83621119 chr15:83621083-83621092 chr15:83621106-83621119
15	CTCF	chr15:83621380-83621530	GM12866	blood:	n/a	n/a
16	CTCF	chr15:83620960-83621110	SAEC	small airway:	n/a	chr15:83621083-83621092
17	CTCF	chr15:83621400-83621550	HMEC	breast:	n/a	n/a
18	CTCF	chr15:83620960-83621110	GM12874	blood:	n/a	chr15:83621083-83621092
19	E2F6	chr15:83621304-83621413	K562	blood:	n/a	chr15:83621402-83621412
20	EGR1	chr15:83621483-83621836	ECC-1	luminal epithelium:	n/a	chr15:83621692-83621705
21	EGR1	chr15:83621527-83621784	K562	blood:	n/a	chr15:83621692-83621705
22	ESR1	chr15:83620854-83621282	ECC-1	luminal epithelium:	n/a	chr15:83621070-83621087 chr15:83621071-83621088 chr15:83621071-83621086 chr15:83621119-83621134
23	ESR1	chr15:83620889-83621336	ECC-1	luminal epithelium:	n/a	chr15:83621070-83621087 chr15:83621071-83621088 chr15:83621071-83621086 chr15:83621119-83621134
24	ESR1	chr15:83620994-83621202	T-47D	breast:	n/a	chr15:83621070-83621087 chr15:83621071-83621088 chr15:83621071-83621086 chr15:83621119-83621134
25	FOS	chr15:83620563-83620874	MCF10A-Er-Src	breast:	n/a	n/a
26	FOS	chr15:83620564-83620876	MCF10A-Er-Src	breast:	n/a	n/a
27	GABPA	chr15:83621121-83621510	H1-hESC	embryonic stem cell:	n/a	chr15:83621260-83621269 chr15:83621249-83621258 chr15:83621337-83621346
28	HA-E2F1	chr15:83620444-83621975	MCF-7	breast:	n/a	chr15:83621691-83621700 chr15:83621676-83621686 chr15:83621402-83621412
29	JUND	chr15:83620875-83620946	H1-hESC	embryonic stem cell:	n/a	n/a
30	JUND	chr15:83621553-83621765	H1-hESC	embryonic stem cell:	n/a	n/a
31	MAX	chr15:83620823-83621963	H1-hESC	embryonic stem cell:	n/a	chr15:83621112-83621122 chr15:83621701-83621710 chr15:83621591-83621601
32	MAX	chr15:83620962-83621382	HepG2	liver:	n/a	chr15:83621112-83621122
33	MAX	chr15:83620897-83621844	H1-hESC	embryonic stem cell:	n/a	chr15:83621112-83621122 chr15:83621701-83621710 chr15:83621591-83621601
34	MAX	chr15:83621063-83621128	HepG2	liver:	n/a	chr15:83621112-83621122
35	MAX	chr15:83620809-83621892	MCF-7	breast:	n/a	chr15:83621112-83621122 chr15:83621701-83621710 chr15:83621591-83621601
36	MAX	chr15:83620745-83622027	A549	lung:	n/a	chr15:83621112-83621122 chr15:83621701-83621710 chr15:83621591-83621601
37	MAX	chr15:83620822-83621317	ECC-1	luminal epithelium:	n/a	chr15:83621112-83621122
38	MAX	chr15:83620875-83621843	ECC-1	luminal epithelium:	n/a	chr15:83621112-83621122 chr15:83621701-83621710 chr15:83621591-83621601
39	MAZ	chr15:83621518-83621815	HepG2	liver:	n/a	chr15:83621701-83621710 chr15:83621591-83621601
40	MXI1	chr15:83621279-83621340	H1-hESC	embryonic stem cell:	n/a	n/a
41	MXI1	chr15:83620999-83621379	HepG2	liver:	n/a	chr15:83621121-83621130
42	MYC	chr15:83621205-83621746	H1-hESC	embryonic stem cell:	n/a	chr15:83621701-83621710 chr15:83621591-83621601
43	MYC	chr15:83621049-83621640	MCF-7	breast:	n/a	chr15:83621112-83621122 chr15:83621591-83621601
44	MYC	chr15:83621611-83621642	MCF10A-Er-Src	breast:	n/a	n/a
45	NFIC	chr15:83621552-83621855	HepG2	liver:	n/a	n/a
46	NFIC	chr15:83621359-83622135	ECC-1	luminal epithelium:	n/a	n/a
47	NFIC	chr15:83621424-83622072	SK-N-SH	brain:	n/a	n/a
48	NFIC	chr15:83620849-83622062	ECC-1	luminal epithelium:	n/a	n/a
49	NFIC	chr15:83621433-83621946	SK-N-SH	brain:	n/a	n/a
50	NR2F2	chr15:83620843-83621333	MCF-7	breast:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:83621694-83621744	MCF10A-Er-Src	breast:	n/a
2	chr15:83621694-83621744	MCF10A-Er-Src	breast:	n/a
3	chr15:83621779-83621829	SK-N-MC	brain:	n/a
4	chr15:83621779-83621829	K562	blood:	n/a
5	chr15:83621726-83621776	HL-60	blood:	n/a
6	chr15:83620951-83621001	NB4	blood:	n/a
7	chr15:83621710-83621760	PFSK-1	brain:	n/a
8	chr15:83620910-83620960	MCF-7	breast:	n/a
9	chr15:83620910-83620960	ovcar-3	ovarian:	n/a
10	chr15:83620951-83621001	HUVEC	blood vessel:	n/a
11	chr15:83621517-83621567	HEK293	kidney:	embryo
12	chr15:83621726-83621776	PANC-1	pancreas:	n/a
13	chr15:83621726-83621776	HCPEpiC	choroid plexus:	n/a
14	chr15:83621694-83621744	Jurkat	blood:	n/a
15	chr15:83620951-83621001	PANC-1	pancreas:	n/a
16	chr15:83621726-83621776	T-47D	breast:	n/a
17	chr15:83621779-83621829	AoSMC	blood vessel:	n/a
18	chr15:83620910-83620960	BE2_C	brain:	n/a
19	chr15:83621726-83621776	HCT-116	colon:	n/a
20	chr15:83621006-83621056	NHDF-neo	bronchial:	n/a
21	chr15:83621694-83621744	IMR90	lung:	fetal
22	chr15:83621726-83621776	Hela-S3	cervix:	n/a
23	chr15:83620951-83621001	K562	blood:	n/a
24	chr15:83620910-83620960	AG09309	skin:	n/a
25	chr15:83620951-83621001	HNPCEpiC	eye:	n/a
26	chr15:83621779-83621829	HRE	kidney:	n/a
27	chr15:83621779-83621829	AG04450	lung:	fetal
28	chr15:83621726-83621776	AG04450	lung:	fetal
29	chr15:83621726-83621776	HNPCEpiC	eye:	n/a
30	chr15:83621006-83621056	AG04450	lung:	fetal
31	chr15:83621710-83621760	HAEpiC	amniotic membrane:	n/a
32	chr15:83621779-83621829	HCM	heart:	n/a
33	chr15:83620910-83620960	HUVEC	blood vessel:	n/a
34	chr15:83621517-83621567	AG04450	lung:	fetal
35	chr15:83620951-83621001	HPAEpiC	pulmonary alveolar:	n/a
36	chr15:83621726-83621776	HRE	kidney:	n/a
37	chr15:83621694-83621744	HUVEC	blood vessel:	n/a
38	chr15:83621710-83621760	NHDF-neo	bronchial:	n/a
39	chr15:83620910-83620960	Jurkat	blood:	n/a
40	chr15:83620951-83621001	ProgFib	skin:	n/a
41	chr15:83620951-83621001	HAEpiC	amniotic membrane:	n/a
42	chr15:83620910-83620960	HCM	heart:	n/a
43	chr15:83620910-83620960	GM19239	blood:	n/a
44	chr15:83621006-83621056	NT2-D1	testis:	n/a
45	chr15:83621694-83621744	HCT-116	colon:	n/a
46	chr15:83620910-83620960	AG04450	lung:	fetal
47	chr15:83621006-83621056	GM06990	blood:	n/a
48	chr15:83620951-83621001	HCF	heart:	n/a
49	chr15:83621517-83621567	GM06990	blood:	n/a
50	chr15:83621006-83621056	HCM	heart:	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:83611455..83612030-chr15:83620705..83621230,2	MCF-7	breast:
2	chr15:83587827..83588581-chr15:83620670..83621179,2	MCF-7	breast:
3	chr15:83620495..83623262-chr15:83678706..83680302,2	MCF-7	breast:
4	chr15:83619377..83622023-chr15:83652376..83655486,3	MCF-7	breast:
5	chr15:83478082..83479855-chr15:83619241..83621149,3	MCF-7	breast:
6	chr15:83620048..83621695-chr15:83654415..83656923,3	MCF-7	breast:
7	chr15:83514448..83517408-chr15:83618486..83620458,2	MCF-7	breast:

Variant related genes	Relation type
HOMER2	TF binding region
HOMER2	CpG island
ENSG00000169612	chromatin interactions
ENSG00000156232	chromatin interactions
ENSG00000103942	chromatin interactions
ENSG00000169609	chromatin interactions

Extended variants
information (count: 62 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:62 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs561225842	chr15:83620381-83620382	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs375937499	chr15:83620489-83620490	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs142673315	chr15:83620490-83620491	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs560358691	chr15:83620519-83620520	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
5	rs549379168	chr15:83620541-83620542	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
6	rs368442315	chr15:83620549-83620550	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
7	rs527757290	chr15:83620561-83620562	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
8	rs563096192	chr15:83620628-83620629	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
9	rs7176998	chr15:83620635-83620636	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs186437025	chr15:83620642-83620643	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs191338200	chr15:83620650-83620651	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
12	rs28652879	chr15:83620699-83620700	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs534795064	chr15:83620712-83620713	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
14	rs144093600	chr15:83620713-83620714	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
15	rs67634629	chr15:83620774-83620775	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs537303068	chr15:83620809-83620810	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
17	rs570670356	chr15:83620824-83620825	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
18	rs556525210	chr15:83620859-83620860	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
19	rs576356356	chr15:83620982-83620983	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
20	rs539165879	chr15:83621008-83621009	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
21	rs7182233	chr15:83621126-83621127	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
22	rs114778976	chr15:83621138-83621139	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
23	rs183654620	chr15:83621189-83621190	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs148675911	chr15:83621221-83621222	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs561108860	chr15:83621229-83621230	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs574799437	chr15:83621265-83621266	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs538152240	chr15:83621595-83621596	Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
28	rs576984893	chr15:83621692-83621693	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
29	rs185677744	chr15:83621700-83621701	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs546049028	chr15:83621713-83621714	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
31	rs372426287	chr15:83621872-83621873	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
32	rs377300585	chr15:83621914-83621915	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
33	rs532002024	chr15:83622052-83622053	Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs564374082	chr15:83622088-83622089	Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs200651064	chr15:83622129-83622130	Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs369938735	chr15:83622307-83622308	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs545918432	chr15:83622347-83622348	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs568555242	chr15:83622364-83622365	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs8023400	chr15:83622374-83622375	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs573216304	chr15:83622402-83622403	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs548415681	chr15:83622413-83622414	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs372565634	chr15:83622418-83622419	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs11634603	chr15:83622477-83622478	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs536426346	chr15:83622478-83622479	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs367850855	chr15:83622479-83622480	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs550592221	chr15:83622493-83622494	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs570068742	chr15:83622513-83622514	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs538638199	chr15:83622586-83622587	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs183114384	chr15:83622618-83622619	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs558886048	chr15:83622621-83622622	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
abnormal development	18461090	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	20409316	CNVD
Mental retardation	17847001	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:339 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83611800-83620400	Weak transcription	Right Atrium	heart
2	chr15:83618800-83622000	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr15:83619000-83620800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr15:83619000-83621600	Active TSS	Pancreas	Pancrea
5	chr15:83619200-83620400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr15:83619200-83621200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:83619400-83622000	Active TSS	Fetal Kidney	kidney
8	chr15:83619600-83620400	Active TSS	Brain Angular Gyrus	brain
9	chr15:83619600-83621000	Flanking Active TSS	Liver	Liver
10	chr15:83619800-83620400	Active TSS	Brain Anterior Caudate	brain
11	chr15:83619800-83620400	Flanking Active TSS	Brain Hippocampus Middle	brain
12	chr15:83619800-83620400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
13	chr15:83619800-83620400	Enhancers	Esophagus	oesophagus
14	chr15:83619800-83620400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
15	chr15:83619800-83620600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:83619800-83620600	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr15:83619800-83620600	Flanking Active TSS	Psoas Muscle	Psoas
18	chr15:83619800-83620800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
19	chr15:83619800-83620800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr15:83619800-83620800	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr15:83619800-83621000	Bivalent Enhancer	Fetal Thymus	thymus
22	chr15:83619800-83621800	Active TSS	Gastric	stomach
23	chr15:83619800-83622200	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr15:83620000-83620400	Enhancers	Brain Substantia Nigra	brain
25	chr15:83620000-83620400	Bivalent Enhancer	Fetal Lung	lung
26	chr15:83620000-83620400	Enhancers	Right Ventricle	heart
27	chr15:83620000-83620400	Flanking Active TSS	HepG2	liver
28	chr15:83620000-83620600	Bivalent Enhancer	Primary B cells from cord blood	blood
29	chr15:83620000-83620600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
30	chr15:83620000-83620600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
31	chr15:83620000-83620800	Enhancers	Lung	lung
32	chr15:83620000-83621000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:83620000-83622000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
34	chr15:83620200-83620400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:83620200-83620400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
36	chr15:83620200-83620400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:83620200-83620400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr15:83620200-83620400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:83620200-83620400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
40	chr15:83620200-83620400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:83620200-83620400	Active TSS	Rectal Smooth Muscle	rectum
42	chr15:83620200-83620400	Bivalent Enhancer	GM12878-XiMat	blood
43	chr15:83620200-83620400	Active TSS	NH-A	brain
44	chr15:83620200-83620400	Enhancers	Osteobl	bone
45	chr15:83620200-83620600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
46	chr15:83620200-83620600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr15:83620200-83620600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
48	chr15:83620200-83620600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:83620200-83620600	Flanking Active TSS	Colon Smooth Muscle	Colon
50	chr15:83620200-83620600	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links