Variant report

Variant	rs67634629
Chromosome Location	chr15:83620774-83620775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83478082..83479855-chr15:83619241..83621149,3	MCF-7	breast:
2	chr15:83620495..83623262-chr15:83678706..83680302,2	MCF-7	breast:
3	chr15:83587827..83588581-chr15:83620670..83621179,2	MCF-7	breast:
4	chr15:83620048..83621695-chr15:83654415..83656923,3	MCF-7	breast:
5	chr15:83611455..83612030-chr15:83620705..83621230,2	MCF-7	breast:
6	chr15:83619377..83622023-chr15:83652376..83655486,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156232	Chromatin interaction
ENSG00000169612	Chromatin interaction
ENSG00000103942	Chromatin interaction
ENSG00000169609	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10220725	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295457	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28408839	1.00[ASN][1000 genomes]
rs28429062	1.00[ASN][1000 genomes]
rs28454771	1.00[ASN][1000 genomes]
rs28463621	1.00[ASN][1000 genomes]
rs28479338	1.00[ASN][1000 genomes]
rs28509292	1.00[ASN][1000 genomes]
rs28510490	1.00[ASN][1000 genomes]
rs28540116	1.00[ASN][1000 genomes]
rs28569354	1.00[ASN][1000 genomes]
rs28570610	1.00[ASN][1000 genomes]
rs28662361	1.00[ASN][1000 genomes]
rs28707195	1.00[ASN][1000 genomes]
rs28711332	1.00[ASN][1000 genomes]
rs28755408	1.00[ASN][1000 genomes]
rs28819476	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28836869	1.00[ASN][1000 genomes]
rs7169539	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170046	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755930	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755935	1.00[ASN][1000 genomes]
rs72755947	1.00[ASN][1000 genomes]
rs72755962	1.00[ASN][1000 genomes]
rs8038619	1.00[ASN][1000 genomes]
rs9919979	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv3361256	chr15:83620373-83622921	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3332267	chr15:83620548-83622646	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83618800-83622000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr15:83619000-83620800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:83619000-83621600	Active TSS	Pancreas	Pancrea
4	chr15:83619200-83621200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:83619400-83622000	Active TSS	Fetal Kidney	kidney
6	chr15:83619600-83621000	Flanking Active TSS	Liver	Liver
7	chr15:83619800-83620800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
8	chr15:83619800-83620800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr15:83619800-83620800	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr15:83619800-83621000	Bivalent Enhancer	Fetal Thymus	thymus
11	chr15:83619800-83621800	Active TSS	Gastric	stomach
12	chr15:83619800-83622200	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr15:83620000-83620800	Enhancers	Lung	lung
14	chr15:83620000-83621000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
15	chr15:83620000-83622000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
16	chr15:83620200-83620800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:83620200-83620800	Flanking Active TSS	Brain Cingulate Gyrus	brain
18	chr15:83620200-83620800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:83620200-83620800	Bivalent Enhancer	Fetal Stomach	stomach
20	chr15:83620200-83620800	Flanking Active TSS	HSMMtube	muscle
21	chr15:83620200-83621000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
22	chr15:83620200-83621000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:83620200-83621000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:83620200-83621000	Bivalent/Poised TSS	Colonic Mucosa	Colon
25	chr15:83620200-83621000	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
26	chr15:83620200-83622200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
27	chr15:83620200-83622200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:83620400-83620800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
29	chr15:83620400-83620800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
30	chr15:83620400-83620800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
31	chr15:83620400-83620800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:83620400-83620800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:83620400-83620800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr15:83620400-83620800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
35	chr15:83620400-83620800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
36	chr15:83620400-83620800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:83620400-83620800	Flanking Active TSS	Brain Angular Gyrus	brain
38	chr15:83620400-83620800	Active TSS	Brain Hippocampus Middle	brain
39	chr15:83620400-83621000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
40	chr15:83620400-83621000	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr15:83620400-83621000	Flanking Bivalent TSS/Enh	HepG2	liver
42	chr15:83620400-83621000	Flanking Active TSS	NH-A	brain
43	chr15:83620400-83621000	Flanking Bivalent TSS/Enh	NHEK	skin
44	chr15:83620400-83621200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:83620400-83621200	Bivalent/Poised TSS	Fetal Lung	lung
46	chr15:83620400-83621200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
47	chr15:83620400-83621800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr15:83620400-83621800	Active TSS	Right Ventricle	heart
49	chr15:83620400-83621800	Active TSS	A549	lung
50	chr15:83620400-83621800	Active TSS	HSMM	muscle

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