Variant report

No.	Distal block	Cell Line	Cell type
1	chr15:83643193..83644736-chr15:83653376..83655618,2	K562	blood:
2	chr15:83639457..83641351-chr15:83641734..83644716,2	MCF-7	breast:
3	chr15:83641825..83644478-chr15:83679776..83682507,2	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10220725	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295457	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408839	1.00[ASN][1000 genomes]
rs28429062	1.00[ASN][1000 genomes]
rs28454771	1.00[ASN][1000 genomes]
rs28463621	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28479338	1.00[ASN][1000 genomes]
rs28509292	1.00[ASN][1000 genomes]
rs28510490	1.00[ASN][1000 genomes]
rs28540116	1.00[ASN][1000 genomes]
rs28569354	1.00[ASN][1000 genomes]
rs28570610	1.00[ASN][1000 genomes]
rs28662361	1.00[ASN][1000 genomes]
rs28707195	1.00[ASN][1000 genomes]
rs28711332	1.00[ASN][1000 genomes]
rs28755408	1.00[ASN][1000 genomes]
rs28836869	1.00[ASN][1000 genomes]
rs67634629	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7169539	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170046	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755930	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755935	1.00[ASN][1000 genomes]
rs72755947	1.00[ASN][1000 genomes]
rs72755962	1.00[ASN][1000 genomes]
rs8038619	1.00[ASN][1000 genomes]
rs9919979	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28819476	HDGFRP3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83622200-83649400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:83635600-83653800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:83635800-83654000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr15:83640200-83654000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:83640600-83654000	Weak transcription	HSMMtube	muscle
6	chr15:83640800-83654000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:83641200-83653800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr15:83641200-83654200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:83642000-83653800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:83642200-83653800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:83642200-83653800	Weak transcription	HSMM	muscle
12	chr15:83642200-83654000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:83642400-83653800	Weak transcription	Liver	Liver
14	chr15:83644200-83646800	Weak transcription	Primary T cells from cord blood	blood

Quick Search: