Variant report

Variant	rs72755962
Chromosome Location	chr15:83696363-83696364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:83696235-83696501	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83680389..83683296-chr15:83695802..83698729,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259767	TF binding region
ENSG00000260608	Chromatin interaction
ENSG00000169609	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10220725	1.00[ASN][1000 genomes]
rs17295457	1.00[ASN][1000 genomes]
rs28408839	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28429062	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454771	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28463621	1.00[ASN][1000 genomes]
rs28479338	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28509292	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28510490	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28540116	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28569354	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28570610	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28662361	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28707195	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28711332	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28755408	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28819476	1.00[ASN][1000 genomes]
rs28836869	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67634629	1.00[ASN][1000 genomes]
rs7167364	0.87[AMR][1000 genomes]
rs7169539	1.00[ASN][1000 genomes]
rs7170046	1.00[ASN][1000 genomes]
rs72753974	1.00[AFR][1000 genomes]
rs72755928	1.00[AFR][1000 genomes]
rs72755930	1.00[ASN][1000 genomes]
rs72755935	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72755947	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755959	1.00[AFR][1000 genomes]
rs72755971	1.00[AFR][1000 genomes]
rs72755995	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72756000	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72758306	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758308	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758310	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758313	0.86[AMR][1000 genomes]
rs72758323	0.86[AMR][1000 genomes]
rs72758331	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758346	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72758350	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7496832	1.00[AFR][1000 genomes]
rs8038619	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9919979	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83681000-83700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:83681000-83705000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:83681200-83698200	Weak transcription	NHLF	lung
4	chr15:83681200-83710200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:83681400-83698000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:83681400-83698400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:83681600-83698200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:83681600-83698200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:83681600-83732000	Weak transcription	Stomach Mucosa	stomach
10	chr15:83682000-83708400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:83682200-83708600	Weak transcription	Fetal Heart	heart
12	chr15:83683000-83723000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:83683400-83726600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:83687000-83708200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:83687200-83697000	Strong transcription	Fetal Intestine Large	intestine
16	chr15:83687600-83698400	Weak transcription	Brain Substantia Nigra	brain
17	chr15:83687600-83701200	Weak transcription	Fetal Brain Female	brain
18	chr15:83687600-83709600	Weak transcription	Brain Angular Gyrus	brain
19	chr15:83688000-83698600	Weak transcription	NH-A	brain
20	chr15:83688800-83708800	Weak transcription	Fetal Brain Male	brain
21	chr15:83689200-83698200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:83689200-83698200	Weak transcription	Aorta	Aorta
23	chr15:83689200-83698200	Weak transcription	Esophagus	oesophagus
24	chr15:83689200-83698200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr15:83689200-83698200	Weak transcription	Small Intestine	intestine
26	chr15:83689200-83698200	Weak transcription	Spleen	Spleen
27	chr15:83689200-83698400	Weak transcription	Right Ventricle	heart
28	chr15:83689200-83705200	Weak transcription	Psoas Muscle	Psoas
29	chr15:83689400-83698200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr15:83689400-83698200	Weak transcription	Ovary	ovary
31	chr15:83689400-83705000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr15:83689400-83708600	Weak transcription	NHEK	skin
33	chr15:83689800-83698200	Weak transcription	Colonic Mucosa	Colon
34	chr15:83690000-83696400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:83690000-83696600	Weak transcription	HUVEC	blood vessel
36	chr15:83690000-83696800	Weak transcription	NHDF-Ad	bronchial
37	chr15:83690000-83697200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr15:83690000-83708200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr15:83690000-83708800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr15:83690200-83697200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr15:83690400-83697200	Weak transcription	Osteobl	bone
42	chr15:83690400-83698200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr15:83690400-83708000	Weak transcription	Brain Germinal Matrix	brain
44	chr15:83690800-83698000	Weak transcription	Primary T cells from cord blood	blood
45	chr15:83690800-83698000	Weak transcription	Colon Smooth Muscle	Colon
46	chr15:83691600-83699000	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr15:83692000-83698800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:83692000-83701200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr15:83692000-83702000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr15:83692200-83696600	Strong transcription	Fetal Muscle Trunk	muscle

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