Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12101636	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17158059	0.96[EUR][1000 genomes]
rs17841157	0.96[EUR][1000 genomes]
rs28360733	0.83[EUR][1000 genomes]
rs28479708	0.96[EUR][1000 genomes]
rs28523446	0.92[EUR][1000 genomes]
rs28558700	0.92[EUR][1000 genomes]
rs28567531	0.88[EUR][1000 genomes]
rs7167364	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7171743	0.92[EUR][1000 genomes]
rs7173876	0.94[EUR][1000 genomes]
rs72755962	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72755971	1.00[AFR][1000 genomes]
rs72755995	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72756000	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758306	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72758308	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72758310	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72758313	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72758323	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72758331	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72758346	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs8026576	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83933000-83951200	Weak transcription	HSMMtube	muscle
2	chr15:83933600-83951600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:83933600-83951600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:83936400-83946600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:83939800-83948200	Weak transcription	HSMM	muscle
6	chr15:83943800-83948000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:83944200-83948200	Genic enhancers	NHEK	skin
8	chr15:83944400-83948200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:83944400-83948800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:83945000-83947200	Enhancers	HMEC	breast
11	chr15:83945000-83950800	Weak transcription	Osteobl	bone
12	chr15:83945000-83951000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:83945200-83948200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:83945600-83951600	Weak transcription	Esophagus	oesophagus
15	chr15:83946400-83947600	Enhancers	NHDF-Ad	bronchial

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