Variant report

Variant	rs8026576
Chromosome Location	chr15:83934112-83934113
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83930140..83931783-chr15:83933449..83935643,2	MCF-7	breast:
2	chr15:83930524..83932618-chr15:83933285..83935373,2	K562	blood:
3	chr15:83930330..83932661-chr15:83933343..83936414,4	K562	blood:
4	chr15:83932787..83934298-chr15:83939449..83942266,2	K562	blood:
5	chr15:83933179..83936065-chr15:83952101..83954549,3	MCF-7	breast:
6	chr15:83925503..83927970-chr15:83932205..83935093,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169594	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12101636	0.96[EUR][1000 genomes]
rs17158059	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes]
rs17841157	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes]
rs28360733	0.81[EUR][1000 genomes]
rs28479708	0.94[EUR][1000 genomes]
rs28523446	0.94[EUR][1000 genomes]
rs28558700	0.94[EUR][1000 genomes]
rs28567531	0.86[EUR][1000 genomes]
rs7167364	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes]
rs7171743	1.00[GIH][hapmap];0.94[EUR][1000 genomes]
rs7173876	1.00[GIH][hapmap];0.84[MKK][hapmap];0.92[EUR][1000 genomes]
rs72755995	0.90[EUR][1000 genomes]
rs72758306	0.90[EUR][1000 genomes]
rs72758308	0.94[EUR][1000 genomes]
rs72758310	0.94[EUR][1000 genomes]
rs72758313	0.94[EUR][1000 genomes]
rs72758323	0.94[EUR][1000 genomes]
rs72758331	0.96[EUR][1000 genomes]
rs72758350	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8026576	HDGFRP3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83920800-83934400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:83923200-83937800	Strong transcription	HSMM	muscle
3	chr15:83925200-83937600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:83927000-83936800	Weak transcription	Esophagus	oesophagus
5	chr15:83929400-83934600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:83929400-83936000	Strong transcription	NHDF-Ad	bronchial
7	chr15:83929800-83936400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:83930000-83937400	Strong transcription	Osteobl	bone
9	chr15:83930600-83940800	Strong transcription	HMEC	breast
10	chr15:83930600-83943600	Strong transcription	NHEK	skin
11	chr15:83931200-83941200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:83931600-83935800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:83931600-83936400	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr15:83932800-83934800	Weak transcription	NHLF	lung
15	chr15:83932800-83935600	Strong transcription	NH-A	brain
16	chr15:83932800-83942200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:83932800-83942200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:83933000-83937600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr15:83933000-83944400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:83933000-83951200	Weak transcription	HSMMtube	muscle
21	chr15:83933200-83940200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:83933600-83937400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:83933600-83951600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr15:83933600-83951600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:83933800-83945800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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