Variant report
| Variant | rs12101636 |
|---|---|
| Chromosome Location | chr15:83907499-83907500 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000166503 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs17158059 | 0.98[EUR][1000 genomes] |
| rs17841157 | 0.98[EUR][1000 genomes] |
| rs28360733 | 0.85[EUR][1000 genomes] |
| rs28479708 | 0.98[EUR][1000 genomes] |
| rs28523446 | 0.94[EUR][1000 genomes] |
| rs28558700 | 0.94[EUR][1000 genomes] |
| rs28567531 | 0.90[EUR][1000 genomes] |
| rs7167364 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7171743 | 0.94[EUR][1000 genomes] |
| rs7173876 | 0.96[EUR][1000 genomes] |
| rs72755995 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72756000 | 0.87[AMR][1000 genomes] |
| rs72758306 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72758308 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72758310 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72758313 | 0.98[EUR][1000 genomes] |
| rs72758323 | 0.98[EUR][1000 genomes] |
| rs72758331 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72758346 | 0.87[AMR][1000 genomes] |
| rs72758350 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs8026576 | 0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534418 | chr15:83770116-83960718 | Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs12101636 | HDGFRP3 | Cis_1M | lymphoblastoid | RTeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
