Variant report

Variant	rs72758346
Chromosome Location	chr15:83920697-83920698
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83918293..83920846-chr15:83924430..83926636,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12101636	0.87[AMR][1000 genomes]
rs7167364	0.87[AMR][1000 genomes]
rs72755959	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs72755962	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72755971	1.00[AFR][1000 genomes]
rs72755995	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72756000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72758306	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758308	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758310	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758313	0.85[AMR][1000 genomes]
rs72758323	0.85[AMR][1000 genomes]
rs72758331	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758350	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83917200-83922200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr15:83917200-83931800	Weak transcription	HSMMtube	muscle
3	chr15:83917200-83932800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr15:83917400-83924400	Weak transcription	NHEK	skin
5	chr15:83918000-83925800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:83918200-83925200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:83918200-83925200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:83920000-83925200	Weak transcription	Osteobl	bone
9	chr15:83920000-83925600	Weak transcription	NHDF-Ad	bronchial
10	chr15:83920000-83926200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:83920000-83929800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:83920000-83932800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:83920200-83920800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:83920200-83925200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr15:83920400-83920800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr15:83920400-83920800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr15:83920400-83920800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:83920600-83923000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:83920600-83923200	Weak transcription	HMEC	breast
20	chr15:83920600-83925600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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