Variant report

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr15:83878578-83880246	MCF-7	breast:	n/a	n/a

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83680783..83683197-chr15:83876059..83879037,3	K562	blood:
2	chr1:192995946..192996514-chr15:83878116..83878651,2	MCF-7	breast:
3	chr15:83877096..83880148-chr15:83900858..83903461,3	MCF-7	breast:
4	chr15:83733142..83737236-chr15:83872525..83879828,15	MCF-7	breast:
5	chr15:83878009..83879789-chr15:83915705..83918184,3	MCF-7	breast:
6	chr15:83872743..83874594-chr15:83878375..83880256,2	K562	blood:
7	chr15:83678154..83684518-chr15:83871554..83879371,12	MCF-7	breast:
8	chr15:83847714..83850048-chr15:83876536..83879465,3	MCF-7	breast:
9	chr15:83734393..83737227-chr15:83876568..83879136,2	K562	blood:
10	chr15:83876782..83879071-chr15:84050776..84053282,2	MCF-7	breast:
11	chr15:83733297..83738085-chr15:83874642..83880991,12	MCF-7	breast:
12	chr15:83759918..83761580-chr15:83878237..83880115,2	MCF-7	breast:
13	chr15:83876872..83879211-chr15:83879767..83882813,3	K562	blood:
14	chr15:83795078..83799216-chr15:83876236..83878812,3	MCF-7	breast:
15	chr15:83678614..83685168-chr15:83874398..83879059,12	MCF-7	breast:
16	chr15:83476923..83480237-chr15:83875108..83878990,4	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12101636	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17158059	0.98[EUR][1000 genomes]
rs17841157	0.98[EUR][1000 genomes]
rs28360733	0.85[EUR][1000 genomes]
rs28479708	0.98[EUR][1000 genomes]
rs28523446	0.94[EUR][1000 genomes]
rs28558700	0.94[EUR][1000 genomes]
rs28567531	0.90[EUR][1000 genomes]
rs7167364	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7171743	0.94[EUR][1000 genomes]
rs7173876	0.96[EUR][1000 genomes]
rs72755947	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72755959	1.00[AFR][1000 genomes]
rs72755962	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72755971	1.00[AFR][1000 genomes]
rs72755995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72756000	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72758308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72758310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72758313	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72758323	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72758346	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758350	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8026576	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83877000-83879400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:83877400-83879000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:83877400-83879000	Weak transcription	GM12878-XiMat	blood
4	chr15:83877400-83879000	Weak transcription	HMEC	breast
5	chr15:83877400-83879200	Weak transcription	NHEK	skin
6	chr15:83877600-83878800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:83877600-83879000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:83877600-83879000	Weak transcription	Fetal Heart	heart
9	chr15:83877600-83879000	Weak transcription	K562	blood
10	chr15:83877600-83879600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr15:83877800-83879000	Weak transcription	Fetal Brain Female	brain
12	chr15:83878200-83882000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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