Variant report

Variant	rs7167364
Chromosome Location	chr15:83828494-83828495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83817376..83819592-chr15:83828370..83830722,2	K562	blood:
2	chr15:83827156..83829042-chr15:83830149..83833522,4	K562	blood:
3	chr15:83827913..83829860-chr15:83861964..83864558,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12101636	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17158059	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs17841157	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs28429062	1.00[GIH][hapmap]
rs28444437	1.00[YRI][hapmap]
rs28479708	0.92[EUR][1000 genomes]
rs28523446	0.88[EUR][1000 genomes]
rs28558700	0.88[EUR][1000 genomes]
rs28567531	0.96[EUR][1000 genomes]
rs28707195	0.81[EUR][1000 genomes]
rs7171743	1.00[GIH][hapmap];0.86[MEX][hapmap];0.88[EUR][1000 genomes]
rs7173876	1.00[GIH][hapmap];0.84[TSI][hapmap];0.94[EUR][1000 genomes]
rs72755962	0.87[AMR][1000 genomes]
rs72755995	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756000	0.87[AMR][1000 genomes]
rs72758306	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72758308	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72758310	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72758313	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72758323	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72758331	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72758346	0.87[AMR][1000 genomes]
rs72758350	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8026576	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes]
rs9919979	0.81[EUR][1000 genomes]
rs9920392	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7167364	HDGFRP3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83777200-83834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:83782600-83833600	Weak transcription	Right Ventricle	heart
3	chr15:83783800-83832400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:83792800-83835200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:83796200-83832000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:83796400-83833000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:83797600-83831800	Weak transcription	Fetal Thymus	thymus
8	chr15:83797800-83832800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:83800000-83830000	Weak transcription	Fetal Heart	heart
10	chr15:83802800-83829800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr15:83808000-83835600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:83812600-83832800	Weak transcription	Small Intestine	intestine
13	chr15:83813400-83832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:83813400-83833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:83813800-83833800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:83818600-83835200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:83818800-83835400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr15:83819000-83831400	Weak transcription	Primary T cells from cord blood	blood
19	chr15:83819000-83832200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:83819000-83833800	Weak transcription	Brain Angular Gyrus	brain
21	chr15:83819200-83831600	Weak transcription	HSMMtube	muscle
22	chr15:83819800-83835000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr15:83820800-83833600	Weak transcription	Osteobl	bone
24	chr15:83820800-83834800	Weak transcription	Fetal Intestine Large	intestine
25	chr15:83821000-83834600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr15:83822000-83832600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr15:83822200-83829200	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr15:83823000-83833400	Weak transcription	NHLF	lung
29	chr15:83823200-83832800	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:83823400-83832800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:83823600-83829000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:83823600-83830800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:83824200-83829000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:83825200-83832200	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr15:83825200-83833800	Weak transcription	Brain Substantia Nigra	brain
36	chr15:83825400-83829000	Strong transcription	NH-A	brain
37	chr15:83825400-83832200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr15:83825600-83834800	Weak transcription	Psoas Muscle	Psoas
39	chr15:83825800-83833800	Weak transcription	Aorta	Aorta
40	chr15:83825800-83834000	Weak transcription	Fetal Stomach	stomach
41	chr15:83825800-83835400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:83825800-83847200	Weak transcription	Left Ventricle	heart
43	chr15:83826000-83830600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr15:83826000-83830600	Weak transcription	Brain Hippocampus Middle	brain
45	chr15:83826000-83831400	Weak transcription	Ovary	ovary
46	chr15:83826000-83832600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr15:83826000-83833800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:83826000-83833800	Weak transcription	Brain Anterior Caudate	brain
49	chr15:83826000-83836200	Weak transcription	Colon Smooth Muscle	Colon
50	chr15:83826200-83829400	Weak transcription	GM12878-XiMat	blood

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