Variant report

Variant	rs28444437
Chromosome Location	chr15:83810217-83810218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28372612	1.00[ASW][hapmap];0.91[AFR][1000 genomes]
rs28412183	0.83[AFR][1000 genomes]
rs28536574	0.91[AFR][1000 genomes]
rs28555236	0.83[AFR][1000 genomes]
rs28627041	0.83[AFR][1000 genomes]
rs28658437	0.91[AFR][1000 genomes]
rs28857271	0.91[AFR][1000 genomes]
rs28885151	1.00[AFR][1000 genomes]
rs7167364	1.00[YRI][hapmap]
rs8026026	1.00[AFR][1000 genomes]
rs8026032	1.00[AFR][1000 genomes]
rs9920374	0.91[AFR][1000 genomes]
rs9920392	1.00[ASW][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83777200-83834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:83779400-83812800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:83781200-83827200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:83782000-83825000	Weak transcription	Psoas Muscle	Psoas
5	chr15:83782200-83812400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr15:83782600-83833600	Weak transcription	Right Ventricle	heart
7	chr15:83783200-83812400	Weak transcription	Brain Angular Gyrus	brain
8	chr15:83783200-83812800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:83783400-83812800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:83783800-83832400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:83787000-83812200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:83788600-83815000	Weak transcription	Pancreas	Pancrea
13	chr15:83791600-83813400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:83792800-83835200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr15:83793800-83812400	Weak transcription	Thymus	Thymus
16	chr15:83794600-83827400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr15:83796200-83812400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:83796200-83826800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr15:83796200-83832000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:83796400-83811800	Weak transcription	Fetal Intestine Small	intestine
21	chr15:83796400-83812200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:83796400-83833000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:83797200-83812400	Weak transcription	Primary T cells from cord blood	blood
24	chr15:83797600-83831800	Weak transcription	Fetal Thymus	thymus
25	chr15:83797800-83832800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:83798600-83812400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr15:83799000-83811000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr15:83799000-83827200	Weak transcription	Gastric	stomach
29	chr15:83799200-83811000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:83799200-83812000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:83799200-83812200	Weak transcription	Fetal Intestine Large	intestine
32	chr15:83799400-83811800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr15:83799400-83812200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:83799400-83812200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr15:83799400-83812400	Weak transcription	Spleen	Spleen
36	chr15:83799600-83812400	Weak transcription	Ovary	ovary
37	chr15:83799600-83813000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr15:83799600-83826000	Weak transcription	NHEK	skin
39	chr15:83799800-83819200	Weak transcription	NHDF-Ad	bronchial
40	chr15:83800000-83818200	Weak transcription	Placenta	Placenta
41	chr15:83800000-83830000	Weak transcription	Fetal Heart	heart
42	chr15:83800200-83812400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr15:83800400-83812200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:83800600-83811200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr15:83800800-83818600	Weak transcription	Primary B cells from cord blood	blood
46	chr15:83801200-83811000	Weak transcription	Adipose Nuclei	Adipose
47	chr15:83801400-83812200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:83801400-83812200	Weak transcription	Aorta	Aorta
49	chr15:83802000-83811200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr15:83802000-83811800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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