Variant report

Variant	rs28627041
Chromosome Location	chr15:83924320-83924321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28372612	0.91[AFR][1000 genomes]
rs28444437	0.83[AFR][1000 genomes]
rs28536574	0.91[AFR][1000 genomes]
rs28658437	0.91[AFR][1000 genomes]
rs28857271	0.91[AFR][1000 genomes]
rs28885151	0.83[AFR][1000 genomes]
rs8026026	0.83[AFR][1000 genomes]
rs8026032	0.83[AFR][1000 genomes]
rs9920374	0.91[AFR][1000 genomes]
rs9920392	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83917200-83931800	Weak transcription	HSMMtube	muscle
2	chr15:83917200-83932800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:83917400-83924400	Weak transcription	NHEK	skin
4	chr15:83918000-83925800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:83918200-83925200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:83918200-83925200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:83920000-83925200	Weak transcription	Osteobl	bone
8	chr15:83920000-83925600	Weak transcription	NHDF-Ad	bronchial
9	chr15:83920000-83926200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:83920000-83929800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:83920000-83932800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:83920200-83925200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr15:83920600-83925600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:83920800-83934400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:83923000-83926200	Weak transcription	NHLF	lung
16	chr15:83923000-83929400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:83923000-83932600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:83923200-83928400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:83923200-83929200	Strong transcription	HMEC	breast
20	chr15:83923200-83931000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:83923200-83937800	Strong transcription	HSMM	muscle
22	chr15:83923600-83924400	Strong transcription	Esophagus	oesophagus
23	chr15:83924000-83931600	Weak transcription	NH-A	brain

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