Variant report

Variant	rs28536574
Chromosome Location	chr15:83819011-83819012
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83817376..83819592-chr15:83828370..83830722,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28372612	1.00[AFR][1000 genomes]
rs28444437	0.91[AFR][1000 genomes]
rs28627041	0.91[AFR][1000 genomes]
rs28658437	1.00[AFR][1000 genomes]
rs28857271	1.00[AFR][1000 genomes]
rs28885151	0.91[AFR][1000 genomes]
rs8026026	0.91[AFR][1000 genomes]
rs8026032	0.91[AFR][1000 genomes]
rs9920374	1.00[AFR][1000 genomes]
rs9920392	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83777200-83834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:83781200-83827200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:83782000-83825000	Weak transcription	Psoas Muscle	Psoas
4	chr15:83782600-83833600	Weak transcription	Right Ventricle	heart
5	chr15:83783800-83832400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr15:83792800-83835200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:83794600-83827400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:83796200-83826800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr15:83796200-83832000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:83796400-83833000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:83797600-83831800	Weak transcription	Fetal Thymus	thymus
12	chr15:83797800-83832800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:83799000-83827200	Weak transcription	Gastric	stomach
14	chr15:83799600-83826000	Weak transcription	NHEK	skin
15	chr15:83799800-83819200	Weak transcription	NHDF-Ad	bronchial
16	chr15:83800000-83830000	Weak transcription	Fetal Heart	heart
17	chr15:83802400-83826600	Weak transcription	Hela-S3	cervix
18	chr15:83802800-83829800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:83803400-83821200	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr15:83806400-83820600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:83807000-83821200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr15:83808000-83835600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr15:83808200-83820000	Weak transcription	NHLF	lung
24	chr15:83808200-83821000	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr15:83809600-83820400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:83809600-83820600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:83809600-83820800	Strong transcription	Fetal Brain Female	brain
28	chr15:83809600-83825400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr15:83810000-83820600	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr15:83811200-83820800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr15:83811800-83821000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr15:83812200-83820400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr15:83812200-83820600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:83812200-83820800	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr15:83812200-83821000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:83812400-83819200	Strong transcription	HSMMtube	muscle
37	chr15:83812400-83820400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:83812400-83820800	Strong transcription	Brain Germinal Matrix	brain
39	chr15:83812600-83832800	Weak transcription	Small Intestine	intestine
40	chr15:83813400-83820200	Weak transcription	Spleen	Spleen
41	chr15:83813400-83827400	Weak transcription	Fetal Intestine Small	intestine
42	chr15:83813400-83832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr15:83813400-83833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr15:83813600-83822400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr15:83813600-83823400	Weak transcription	Thymus	Thymus
46	chr15:83813600-83823600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr15:83813600-83825400	Weak transcription	Aorta	Aorta
48	chr15:83813800-83820000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:83813800-83824800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:83813800-83833800	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links