Variant report

Variant	rs28885151
Chromosome Location	chr15:83835620-83835621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83825517..83828204-chr15:83833950..83836834,2	MCF-7	breast:
2	chr15:83833754..83836385-chr15:83837936..83839475,2	K562	blood:
3	chr15:83834964..83840588-chr15:83874121..83878306,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166503	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28372612	0.91[AFR][1000 genomes]
rs28412183	0.83[AFR][1000 genomes]
rs28444437	1.00[AFR][1000 genomes]
rs28536574	0.91[AFR][1000 genomes]
rs28555236	0.83[AFR][1000 genomes]
rs28627041	0.83[AFR][1000 genomes]
rs28658437	0.91[AFR][1000 genomes]
rs28857271	0.91[AFR][1000 genomes]
rs8026026	1.00[AFR][1000 genomes]
rs8026032	1.00[AFR][1000 genomes]
rs9920374	0.91[AFR][1000 genomes]
rs9920392	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83825800-83847200	Weak transcription	Left Ventricle	heart
2	chr15:83826000-83836200	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:83830200-83838600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:83832200-83835800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:83832200-83865600	Weak transcription	HSMM	muscle
6	chr15:83833600-83836000	Enhancers	K562	blood
7	chr15:83834000-83860600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:83834200-83836000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr15:83834200-83836400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr15:83834200-83839000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:83834200-83842200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:83834200-83846800	Weak transcription	Osteobl	bone
13	chr15:83834800-83836000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:83834800-83836000	Weak transcription	Primary T cells from cord blood	blood
15	chr15:83835200-83835800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr15:83835200-83836000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr15:83835400-83835800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr15:83835400-83835800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:83835400-83835800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr15:83835400-83836400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:83835600-83836000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:83835600-83836000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr15:83835600-83836000	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr15:83835600-83836000	Genic enhancers	HUVEC	blood vessel

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