Variant report

Variant	rs8026026
Chromosome Location	chr15:83832185-83832186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83679489..83680165-chr15:83832055..83832883,2	K562	blood:
2	chr15:83824239..83826834-chr15:83830825..83833797,3	MCF-7	breast:
3	chr15:83832074..83835254-chr15:83836409..83839436,3	K562	blood:
4	chr15:83825010..83827114-chr15:83828912..83832901,4	K562	blood:
5	chr15:83827156..83829042-chr15:83830149..83833522,4	K562	blood:

Variant related genes	Relation type
ENSG00000166503	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28372612	0.91[AFR][1000 genomes]
rs28412183	0.83[AFR][1000 genomes]
rs28444437	1.00[AFR][1000 genomes]
rs28536574	0.91[AFR][1000 genomes]
rs28555236	0.83[AFR][1000 genomes]
rs28627041	0.83[AFR][1000 genomes]
rs28658437	0.91[AFR][1000 genomes]
rs28857271	0.91[AFR][1000 genomes]
rs28885151	1.00[AFR][1000 genomes]
rs8026032	1.00[AFR][1000 genomes]
rs9920374	0.91[AFR][1000 genomes]
rs9920392	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83777200-83834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:83782600-83833600	Weak transcription	Right Ventricle	heart
3	chr15:83783800-83832400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:83792800-83835200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:83796400-83833000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:83797800-83832800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:83808000-83835600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:83812600-83832800	Weak transcription	Small Intestine	intestine
9	chr15:83813400-83833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:83813800-83833800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr15:83818600-83835200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:83818800-83835400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:83819000-83832200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:83819000-83833800	Weak transcription	Brain Angular Gyrus	brain
15	chr15:83819800-83835000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr15:83820800-83833600	Weak transcription	Osteobl	bone
17	chr15:83820800-83834800	Weak transcription	Fetal Intestine Large	intestine
18	chr15:83821000-83834600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr15:83822000-83832600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:83823000-83833400	Weak transcription	NHLF	lung
21	chr15:83823200-83832800	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr15:83823400-83832800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:83825200-83832200	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr15:83825200-83833800	Weak transcription	Brain Substantia Nigra	brain
25	chr15:83825400-83832200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr15:83825600-83834800	Weak transcription	Psoas Muscle	Psoas
27	chr15:83825800-83833800	Weak transcription	Aorta	Aorta
28	chr15:83825800-83834000	Weak transcription	Fetal Stomach	stomach
29	chr15:83825800-83835400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:83825800-83847200	Weak transcription	Left Ventricle	heart
31	chr15:83826000-83832600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr15:83826000-83833800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:83826000-83833800	Weak transcription	Brain Anterior Caudate	brain
34	chr15:83826000-83836200	Weak transcription	Colon Smooth Muscle	Colon
35	chr15:83826200-83833600	Weak transcription	Fetal Brain Male	brain
36	chr15:83826400-83833200	Weak transcription	NHDF-Ad	bronchial
37	chr15:83826400-83833400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr15:83826400-83833800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:83826400-83834600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr15:83826600-83833200	Weak transcription	NHEK	skin
41	chr15:83826800-83832200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:83826800-83833200	Weak transcription	Dnd41	blood
43	chr15:83826800-83833400	Weak transcription	A549	lung
44	chr15:83826800-83834600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:83826800-83835200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr15:83826800-83835200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr15:83828000-83833200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:83829000-83832600	Weak transcription	NH-A	brain
49	chr15:83829000-83833000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr15:83829200-83833400	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links