Variant report

Variant	rs8026032
Chromosome Location	chr15:83840452-83840453
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83834964..83840588-chr15:83874121..83878306,6	MCF-7	breast:
2	chr15:83678549..83681389-chr15:83840449..83842811,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169609	Chromatin interaction
ENSG00000166503	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28372612	0.91[AFR][1000 genomes]
rs28412183	0.83[AFR][1000 genomes]
rs28444437	1.00[AFR][1000 genomes]
rs28536574	0.91[AFR][1000 genomes]
rs28555236	0.83[AFR][1000 genomes]
rs28627041	0.83[AFR][1000 genomes]
rs28658437	0.91[AFR][1000 genomes]
rs28857271	0.91[AFR][1000 genomes]
rs28885151	1.00[AFR][1000 genomes]
rs8026026	1.00[AFR][1000 genomes]
rs9920374	0.91[AFR][1000 genomes]
rs9920392	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83825800-83847200	Weak transcription	Left Ventricle	heart
2	chr15:83832200-83865600	Weak transcription	HSMM	muscle
3	chr15:83834000-83860600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:83834200-83842200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:83834200-83846800	Weak transcription	Osteobl	bone
6	chr15:83836000-83847400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:83836000-83870200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:83836200-83845200	Weak transcription	Right Atrium	heart
9	chr15:83836400-83861600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:83837000-83873600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:83838000-83862000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr15:83839200-83841200	ZNF genes & repeats	GM12878-XiMat	blood
13	chr15:83839200-83862400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:83839600-83841400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:83840000-83840600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:83840000-83840600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
17	chr15:83840000-83860200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:83840000-83867200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:83840000-83867200	Weak transcription	Fetal Brain Female	brain
20	chr15:83840200-83869200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:83840400-83840600	ZNF genes & repeats	Brain Germinal Matrix	brain
22	chr15:83840400-83842400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:83840400-83845000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr15:83840400-83861000	Weak transcription	HUVEC	blood vessel

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