Variant report

Variant	rs9920392
Chromosome Location	chr15:83873197-83873198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83872736..83874243-chr15:83878756..83880256,2	K562	blood:
2	chr15:83733142..83737236-chr15:83872525..83879828,15	MCF-7	breast:
3	chr15:83872743..83874594-chr15:83878375..83880256,2	K562	blood:
4	chr15:83678154..83684518-chr15:83871554..83879371,12	MCF-7	breast:
5	chr15:83733314..83735882-chr15:83870661..83874279,4	K562	blood:
6	chr15:83733314..83737988-chr15:83872344..83875458,5	K562	blood:
7	chr15:83734651..83737129-chr15:83872605..83874333,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263643	Chromatin interaction
ENSG00000249214	Chromatin interaction
ENSG00000260608	Chromatin interaction
ENSG00000064726	Chromatin interaction
ENSG00000169609	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28372612	1.00[ASW][hapmap];0.91[MKK][hapmap];1.00[AFR][1000 genomes]
rs28444437	1.00[ASW][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs28536574	1.00[AFR][1000 genomes]
rs28627041	0.91[AFR][1000 genomes]
rs28658437	1.00[AFR][1000 genomes]
rs28857271	1.00[AFR][1000 genomes]
rs28885151	0.91[AFR][1000 genomes]
rs7167364	1.00[YRI][hapmap]
rs8026026	0.91[AFR][1000 genomes]
rs8026032	0.91[AFR][1000 genomes]
rs9920374	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83837000-83873600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:83847400-83873400	Weak transcription	Fetal Kidney	kidney
3	chr15:83861000-83873600	Weak transcription	Left Ventricle	heart
4	chr15:83861000-83873600	Weak transcription	Right Atrium	heart
5	chr15:83862800-83875200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:83863600-83873400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:83863600-83874400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:83864000-83873400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:83866000-83873400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr15:83866000-83873400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr15:83867600-83873200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:83867800-83873400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:83867800-83874800	Weak transcription	Ovary	ovary
14	chr15:83868200-83874600	Weak transcription	Primary T cells from cord blood	blood
15	chr15:83869600-83873400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:83869600-83873600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:83869600-83874800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr15:83869800-83873400	Weak transcription	NH-A	brain
19	chr15:83870600-83873600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr15:83870600-83875400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:83870800-83873600	Weak transcription	Brain Hippocampus Middle	brain
22	chr15:83870800-83873600	Weak transcription	NHDF-Ad	bronchial
23	chr15:83870800-83874400	Weak transcription	Hela-S3	cervix
24	chr15:83871000-83874600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:83871200-83873400	Weak transcription	A549	lung
26	chr15:83871200-83873400	Weak transcription	HMEC	breast
27	chr15:83871200-83873600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr15:83871200-83873600	Weak transcription	HSMM	muscle
29	chr15:83871400-83873600	Weak transcription	Aorta	Aorta
30	chr15:83871400-83875000	Weak transcription	Adipose Nuclei	Adipose
31	chr15:83871600-83873200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:83871600-83873400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:83871600-83874600	Weak transcription	Brain Substantia Nigra	brain
34	chr15:83871800-83873400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:83871800-83873400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr15:83871800-83873400	Weak transcription	Fetal Heart	heart
37	chr15:83871800-83873400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr15:83871800-83873600	Weak transcription	HSMMtube	muscle
39	chr15:83871800-83873600	Weak transcription	NHLF	lung
40	chr15:83872000-83873400	Weak transcription	Colon Smooth Muscle	Colon
41	chr15:83872000-83873400	Weak transcription	NHEK	skin
42	chr15:83872000-83873600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:83872000-83873600	Weak transcription	Osteobl	bone
44	chr15:83872000-83877200	Active TSS	GM12878-XiMat	blood
45	chr15:83872200-83873400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:83872200-83873600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr15:83872200-83874600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr15:83872400-83873400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:83872400-83873400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:83872400-83873400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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