Variant report

Variant	rs7173876
Chromosome Location	chr15:83845282-83845283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83842036..83844043-chr15:83845091..83846853,2	MCF-7	breast:
2	chr15:83842001..83844474-chr15:83845006..83846665,3	K562	blood:
3	chr15:83844690..83846547-chr15:83848630..83850161,2	K562	blood:

Variant related genes	Relation type
ENSG00000259986	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12101636	0.96[EUR][1000 genomes]
rs17158059	1.00[GIH][hapmap];0.94[EUR][1000 genomes]
rs17841157	1.00[GIH][hapmap];0.94[EUR][1000 genomes]
rs28360733	0.82[EUR][1000 genomes]
rs28429062	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs28479708	0.94[EUR][1000 genomes]
rs28523446	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28558700	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28567531	0.94[EUR][1000 genomes]
rs28662361	1.00[CEU][hapmap]
rs28707195	0.83[EUR][1000 genomes]
rs28711332	1.00[CEU][hapmap]
rs7167364	1.00[GIH][hapmap];0.84[TSI][hapmap];0.94[EUR][1000 genomes]
rs7171743	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72755995	0.94[EUR][1000 genomes]
rs72758306	0.94[EUR][1000 genomes]
rs72758308	0.98[EUR][1000 genomes]
rs72758310	0.98[EUR][1000 genomes]
rs72758313	0.94[EUR][1000 genomes]
rs72758323	0.94[EUR][1000 genomes]
rs72758331	0.96[EUR][1000 genomes]
rs72758350	0.94[EUR][1000 genomes]
rs8026576	1.00[GIH][hapmap];0.84[MKK][hapmap];0.92[EUR][1000 genomes]
rs8038619	1.00[CEU][hapmap]
rs9919979	1.00[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7173876	NA	cis	multi-tissue	Pritchard
rs7173876	AC024270.1	cis	multi-tissue	Pritchard
rs7173876	HDGFRP3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83825800-83847200	Weak transcription	Left Ventricle	heart
2	chr15:83832200-83865600	Weak transcription	HSMM	muscle
3	chr15:83834000-83860600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:83834200-83846800	Weak transcription	Osteobl	bone
5	chr15:83836000-83847400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr15:83836000-83870200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:83836400-83861600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr15:83837000-83873600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:83838000-83862000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:83839200-83862400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:83840000-83860200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:83840000-83867200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:83840000-83867200	Weak transcription	Fetal Brain Female	brain
14	chr15:83840200-83869200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:83840400-83861000	Weak transcription	HUVEC	blood vessel
16	chr15:83840600-83857400	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:83840600-83863400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:83841200-83872600	Weak transcription	Brain Germinal Matrix	brain
19	chr15:83841600-83854600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:83841800-83870400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr15:83842800-83848200	Weak transcription	Ovary	ovary
22	chr15:83844000-83847600	Weak transcription	Fetal Heart	heart
23	chr15:83844200-83845600	Enhancers	K562	blood
24	chr15:83844800-83845600	Enhancers	Right Ventricle	heart
25	chr15:83845000-83845400	Enhancers	GM12878-XiMat	blood
26	chr15:83845000-83845600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:83845000-83854200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:83845000-83854600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:83845200-83845400	Enhancers	Right Atrium	heart

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