Variant report

Variant	rs72758306
Chromosome Location	chr15:83825209-83825210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83823673..83826266-chr15:83826620..83828942,2	MCF-7	breast:
2	chr15:83824318..83826179-chr15:83843195..83845112,2	K562	blood:
3	chr15:83805588..83807579-chr15:83823360..83826352,2	K562	blood:

Variant related genes	Relation type
ENSG00000166503	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12101636	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17158059	0.92[EUR][1000 genomes]
rs17841157	0.92[EUR][1000 genomes]
rs28479708	0.92[EUR][1000 genomes]
rs28523446	0.88[EUR][1000 genomes]
rs28558700	0.88[EUR][1000 genomes]
rs28567531	0.96[EUR][1000 genomes]
rs28707195	0.81[EUR][1000 genomes]
rs7167364	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7171743	0.88[EUR][1000 genomes]
rs7173876	0.94[EUR][1000 genomes]
rs72755928	1.00[AFR][1000 genomes]
rs72755935	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72755947	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72755959	1.00[AFR][1000 genomes]
rs72755962	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72755971	1.00[AFR][1000 genomes]
rs72755995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756000	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72758310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72758313	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72758323	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72758331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72758346	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758350	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8026576	0.90[EUR][1000 genomes]
rs9919979	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83777200-83834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:83781200-83827200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:83782600-83833600	Weak transcription	Right Ventricle	heart
4	chr15:83783800-83832400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:83792800-83835200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:83794600-83827400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:83796200-83826800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr15:83796200-83832000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:83796400-83833000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:83797600-83831800	Weak transcription	Fetal Thymus	thymus
11	chr15:83797800-83832800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:83799000-83827200	Weak transcription	Gastric	stomach
13	chr15:83799600-83826000	Weak transcription	NHEK	skin
14	chr15:83800000-83830000	Weak transcription	Fetal Heart	heart
15	chr15:83802400-83826600	Weak transcription	Hela-S3	cervix
16	chr15:83802800-83829800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr15:83808000-83835600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:83809600-83825400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:83812600-83832800	Weak transcription	Small Intestine	intestine
20	chr15:83813400-83827400	Weak transcription	Fetal Intestine Small	intestine
21	chr15:83813400-83832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:83813400-83833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:83813600-83825400	Weak transcription	Aorta	Aorta
24	chr15:83813800-83833800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr15:83814000-83827200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr15:83815000-83827600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:83818600-83835200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr15:83818800-83835400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr15:83819000-83831400	Weak transcription	Primary T cells from cord blood	blood
30	chr15:83819000-83832200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:83819000-83833800	Weak transcription	Brain Angular Gyrus	brain
32	chr15:83819200-83831600	Weak transcription	HSMMtube	muscle
33	chr15:83819800-83825400	Weak transcription	Adipose Nuclei	Adipose
34	chr15:83819800-83835000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr15:83820000-83825800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr15:83820800-83827400	Weak transcription	Primary B cells from cord blood	blood
37	chr15:83820800-83833600	Weak transcription	Osteobl	bone
38	chr15:83820800-83834800	Weak transcription	Fetal Intestine Large	intestine
39	chr15:83821000-83834600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr15:83822000-83832600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr15:83822200-83829200	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr15:83822800-83825800	Strong transcription	Fetal Stomach	stomach
43	chr15:83822800-83827000	Strong transcription	HUVEC	blood vessel
44	chr15:83823000-83826200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:83823000-83833400	Weak transcription	NHLF	lung
46	chr15:83823200-83826800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:83823200-83826800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:83823200-83826800	Strong transcription	HSMM	muscle
49	chr15:83823200-83827400	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr15:83823200-83832800	Strong transcription	HUES64 Cell Line	embryonic stem cell

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