Variant report

Variant	rs72755928
Chromosome Location	chr15:83593620-83593621
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12102013	0.83[EUR][1000 genomes]
rs72753974	1.00[AFR][1000 genomes]
rs72755935	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72755947	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72755959	1.00[AFR][1000 genomes]
rs72755962	1.00[AFR][1000 genomes]
rs72755971	1.00[AFR][1000 genomes]
rs72755995	1.00[AFR][1000 genomes]
rs72756000	1.00[AFR][1000 genomes]
rs72758306	1.00[AFR][1000 genomes]
rs72758308	1.00[AFR][1000 genomes]
rs72758310	1.00[AFR][1000 genomes]
rs7496832	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83583200-83597200	Enhancers	Pancreas	Pancrea
2	chr15:83585600-83599200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:83585800-83600000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:83586600-83619400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:83587600-83594000	Weak transcription	Spleen	Spleen
6	chr15:83588200-83596600	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:83588800-83611600	Weak transcription	Right Atrium	heart
8	chr15:83589400-83602800	Weak transcription	Esophagus	oesophagus
9	chr15:83589600-83605400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:83590000-83594200	Enhancers	Gastric	stomach
11	chr15:83591400-83599000	Weak transcription	HSMMtube	muscle
12	chr15:83591800-83594800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr15:83591800-83595000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr15:83592000-83594000	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:83592600-83596600	Weak transcription	HepG2	liver
16	chr15:83592600-83610600	Weak transcription	Liver	Liver
17	chr15:83593600-83604800	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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