Variant report

Variant	rs72755959
Chromosome Location	chr15:83683705-83683706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:20)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:20 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:83682482-83683727	GM12892	blood:	n/a	n/a
2	POLR2A	chr15:83682685-83685447	K562	blood:	n/a	n/a
3	POLR2A	chr15:83682390-83684992	GM12891	blood:	n/a	n/a
4	BCL3	chr15:83682440-83683858	A549	lung:	n/a	n/a
5	POLR2A	chr15:83681750-83683913	PANC-1	pancreas:	n/a	n/a
6	POLR2A	chr15:83683147-83683815	K562	blood:	n/a	n/a
7	POLR2A	chr15:83682481-83683744	MCF-7	breast:	n/a	n/a
8	POLR2A	chr15:83682363-83686962	K562	blood:	n/a	n/a
9	GATA3	chr15:83683581-83683802	SH-SY5Y	brain:	n/a	chr15:83683588-83683598
10	POLR2A	chr15:83682792-83683887	PFSK-1	brain:	n/a	n/a
11	POLR2A	chr15:83682959-83683822	A549	lung:	n/a	n/a
12	POLR2A	chr15:83682475-83683718	SK-N-MC	brain:	n/a	n/a
13	POLR2A	chr15:83682398-83685006	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr15:83682895-83683863	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr15:83682891-83683827	SK-N-SH	brain:	n/a	n/a
16	POLR2A	chr15:83682431-83684805	GM12878	blood:	n/a	n/a
17	POLR2A	chr15:83683702-83683763	MCF10A-Er-Src	breast:	n/a	n/a
18	POLR2A	chr15:83683081-83683892	HepG2	liver:	n/a	n/a
19	POLR2A	chr15:83682635-83683868	K562	blood:	n/a	n/a
20	POLR2A	chr15:83682546-83684478	PFSK-1	brain:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83678535..83684480-chr15:83731660..83738533,12	MCF-7	breast:
2	chr15:83678614..83685168-chr15:83874398..83879059,12	MCF-7	breast:
3	chr15:83679205..83686226-chr15:83733349..83739878,12	K562	blood:
4	chr15:83680931..83684060-chr15:83687587..83694949,8	K562	blood:
5	chr15:83681680..83683853-chr15:83750233..83753153,2	MCF-7	breast:
6	chr15:83678154..83684518-chr15:83871554..83879371,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000249214	TF binding region
C15orf40	TF binding region
ENSG00000260351	Chromatin interaction
ENSG00000263643	Chromatin interaction
ENSG00000064726	Chromatin interaction
ENSG00000166503	Chromatin interaction
ENSG00000259767	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs72753974	1.00[AFR][1000 genomes]
rs72755928	1.00[AFR][1000 genomes]
rs72755935	1.00[AFR][1000 genomes]
rs72755947	1.00[AFR][1000 genomes]
rs72755962	1.00[AFR][1000 genomes]
rs72755971	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs72755995	1.00[AFR][1000 genomes]
rs72756000	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs72758306	1.00[AFR][1000 genomes]
rs72758308	1.00[AFR][1000 genomes]
rs72758310	1.00[AFR][1000 genomes]
rs72758313	0.84[AMR][1000 genomes]
rs72758323	0.84[AMR][1000 genomes]
rs72758331	1.00[AFR][1000 genomes]
rs72758346	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7496832	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83680800-83688800	Weak transcription	Aorta	Aorta
2	chr15:83681000-83684600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:83681000-83700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:83681000-83705000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:83681200-83684200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:83681200-83684400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr15:83681200-83686000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr15:83681200-83687400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:83681200-83688800	Weak transcription	Psoas Muscle	Psoas
10	chr15:83681200-83693400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:83681200-83698200	Weak transcription	NHLF	lung
12	chr15:83681200-83710200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:83681400-83684200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr15:83681400-83685200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr15:83681400-83685400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:83681400-83685800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr15:83681400-83685800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:83681400-83685800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:83681400-83685800	Weak transcription	Liver	Liver
20	chr15:83681400-83685800	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:83681400-83685800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr15:83681400-83685800	Weak transcription	Placenta	Placenta
23	chr15:83681400-83685800	Weak transcription	NH-A	brain
24	chr15:83681400-83687200	Weak transcription	Colonic Mucosa	Colon
25	chr15:83681400-83698000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr15:83681400-83698400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:83681600-83683800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:83681600-83684200	Weak transcription	Fetal Intestine Small	intestine
29	chr15:83681600-83684200	Weak transcription	Left Ventricle	heart
30	chr15:83681600-83684400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:83681600-83684400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr15:83681600-83684400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr15:83681600-83684400	Weak transcription	Adipose Nuclei	Adipose
34	chr15:83681600-83684400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr15:83681600-83684400	Weak transcription	Hela-S3	cervix
36	chr15:83681600-83684400	Weak transcription	HSMM	muscle
37	chr15:83681600-83684400	Weak transcription	NHDF-Ad	bronchial
38	chr15:83681600-83684800	Weak transcription	Fetal Intestine Large	intestine
39	chr15:83681600-83684800	Weak transcription	HUVEC	blood vessel
40	chr15:83681600-83685200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr15:83681600-83685400	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr15:83681600-83685400	Weak transcription	Primary B cells from cord blood	blood
43	chr15:83681600-83685400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr15:83681600-83685400	Weak transcription	HMEC	breast
45	chr15:83681600-83685800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr15:83681600-83685800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr15:83681600-83685800	Weak transcription	Colon Smooth Muscle	Colon
48	chr15:83681600-83685800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr15:83681600-83685800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr15:83681600-83685800	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links