Variant report

Variant	rs72758308
Chromosome Location	chr15:83842739-83842740
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83840803..83842845-chr15:83847606..83849747,2	K562	blood:
2	chr15:83732514..83734789-chr15:83841378..83843328,2	MCF-7	breast:
3	chr15:83842036..83844043-chr15:83845091..83846853,2	MCF-7	breast:
4	chr15:83842001..83844474-chr15:83845006..83846665,3	K562	blood:
5	chr15:83678549..83681389-chr15:83840449..83842811,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259986	Chromatin interaction
ENSG00000169609	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12101636	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17158059	0.96[EUR][1000 genomes]
rs17841157	0.96[EUR][1000 genomes]
rs28360733	0.84[EUR][1000 genomes]
rs28479708	0.96[EUR][1000 genomes]
rs28523446	0.92[EUR][1000 genomes]
rs28558700	0.92[EUR][1000 genomes]
rs28567531	0.92[EUR][1000 genomes]
rs28707195	0.81[EUR][1000 genomes]
rs7167364	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7171743	0.92[EUR][1000 genomes]
rs7173876	0.98[EUR][1000 genomes]
rs72755928	1.00[AFR][1000 genomes]
rs72755935	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72755947	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72755959	1.00[AFR][1000 genomes]
rs72755962	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72755971	1.00[AFR][1000 genomes]
rs72755995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72756000	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72758310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72758313	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72758323	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72758331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72758346	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758350	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8026576	0.94[EUR][1000 genomes]
rs9919979	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83825800-83847200	Weak transcription	Left Ventricle	heart
2	chr15:83832200-83865600	Weak transcription	HSMM	muscle
3	chr15:83834000-83860600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:83834200-83846800	Weak transcription	Osteobl	bone
5	chr15:83836000-83847400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr15:83836000-83870200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:83836200-83845200	Weak transcription	Right Atrium	heart
8	chr15:83836400-83861600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:83837000-83873600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:83838000-83862000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:83839200-83862400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:83840000-83860200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:83840000-83867200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:83840000-83867200	Weak transcription	Fetal Brain Female	brain
15	chr15:83840200-83869200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr15:83840400-83845000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:83840400-83861000	Weak transcription	HUVEC	blood vessel
18	chr15:83840600-83857400	Weak transcription	Fetal Muscle Leg	muscle
19	chr15:83840600-83863400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:83841000-83844800	Weak transcription	Right Ventricle	heart
21	chr15:83841200-83844600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:83841200-83872600	Weak transcription	Brain Germinal Matrix	brain
23	chr15:83841600-83854600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:83841800-83870400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:83842200-83843000	Weak transcription	GM12878-XiMat	blood
26	chr15:83842400-83844600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:83842600-83842800	Enhancers	Ovary	ovary

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