Variant report

Variant	rs72756000
Chromosome Location	chr15:83821704-83821705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12101636	0.87[AMR][1000 genomes]
rs7167364	0.87[AMR][1000 genomes]
rs72755928	1.00[AFR][1000 genomes]
rs72755935	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72755947	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72755959	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs72755962	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72755971	1.00[AFR][1000 genomes]
rs72755995	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758306	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758308	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758310	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758313	0.85[AMR][1000 genomes]
rs72758323	0.85[AMR][1000 genomes]
rs72758331	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72758346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72758350	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83777200-83834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:83781200-83827200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:83782000-83825000	Weak transcription	Psoas Muscle	Psoas
4	chr15:83782600-83833600	Weak transcription	Right Ventricle	heart
5	chr15:83783800-83832400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr15:83792800-83835200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:83794600-83827400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:83796200-83826800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr15:83796200-83832000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:83796400-83833000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:83797600-83831800	Weak transcription	Fetal Thymus	thymus
12	chr15:83797800-83832800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:83799000-83827200	Weak transcription	Gastric	stomach
14	chr15:83799600-83826000	Weak transcription	NHEK	skin
15	chr15:83800000-83830000	Weak transcription	Fetal Heart	heart
16	chr15:83802400-83826600	Weak transcription	Hela-S3	cervix
17	chr15:83802800-83829800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr15:83808000-83835600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr15:83809600-83825400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr15:83812600-83832800	Weak transcription	Small Intestine	intestine
21	chr15:83813400-83827400	Weak transcription	Fetal Intestine Small	intestine
22	chr15:83813400-83832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:83813400-83833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:83813600-83822400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr15:83813600-83823400	Weak transcription	Thymus	Thymus
26	chr15:83813600-83823600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr15:83813600-83825400	Weak transcription	Aorta	Aorta
28	chr15:83813800-83824800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:83813800-83833800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr15:83814000-83825200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:83814000-83827200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr15:83814200-83824400	Weak transcription	Brain Substantia Nigra	brain
33	chr15:83815000-83827600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr15:83815800-83822000	Strong transcription	HUVEC	blood vessel
35	chr15:83816200-83822800	Weak transcription	Fetal Stomach	stomach
36	chr15:83816200-83823000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:83818600-83835200	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr15:83818800-83822600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:83818800-83825000	Weak transcription	Fetal Brain Male	brain
40	chr15:83818800-83835400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr15:83819000-83824800	Weak transcription	Lung	lung
42	chr15:83819000-83831400	Weak transcription	Primary T cells from cord blood	blood
43	chr15:83819000-83832200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr15:83819000-83833800	Weak transcription	Brain Angular Gyrus	brain
45	chr15:83819200-83831600	Weak transcription	HSMMtube	muscle
46	chr15:83819800-83822800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:83819800-83825000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr15:83819800-83825400	Weak transcription	Adipose Nuclei	Adipose
49	chr15:83819800-83835000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr15:83820000-83823600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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