Variant report

Variant	rs28567531
Chromosome Location	chr15:83834324-83834325
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83825517..83828204-chr15:83833950..83836834,2	MCF-7	breast:
2	chr15:83833754..83836385-chr15:83837936..83839475,2	K562	blood:
3	chr15:83832074..83835254-chr15:83836409..83839436,3	K562	blood:

Variant related genes	Relation type
ENSG00000166503	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12101636	0.90[EUR][1000 genomes]
rs17158059	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17841157	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28360733	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs28479708	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28523446	0.88[EUR][1000 genomes]
rs28558700	0.88[EUR][1000 genomes]
rs28707195	0.81[EUR][1000 genomes]
rs7167364	0.96[EUR][1000 genomes]
rs7171743	0.88[EUR][1000 genomes]
rs7173876	0.94[EUR][1000 genomes]
rs72755995	0.96[EUR][1000 genomes]
rs72758306	0.96[EUR][1000 genomes]
rs72758308	0.92[EUR][1000 genomes]
rs72758310	0.92[EUR][1000 genomes]
rs72758313	0.88[EUR][1000 genomes]
rs72758323	0.88[EUR][1000 genomes]
rs72758331	0.90[EUR][1000 genomes]
rs72758350	0.88[EUR][1000 genomes]
rs8026576	0.86[EUR][1000 genomes]
rs9919979	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28567531	HDGFRP3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83777200-83834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:83792800-83835200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:83808000-83835600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:83818600-83835200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:83818800-83835400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:83819800-83835000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:83820800-83834800	Weak transcription	Fetal Intestine Large	intestine
8	chr15:83821000-83834600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:83825600-83834800	Weak transcription	Psoas Muscle	Psoas
10	chr15:83825800-83835400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:83825800-83847200	Weak transcription	Left Ventricle	heart
12	chr15:83826000-83836200	Weak transcription	Colon Smooth Muscle	Colon
13	chr15:83826400-83834600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr15:83826800-83834600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:83826800-83835200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:83826800-83835200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr15:83830200-83838600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:83832200-83834800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:83832200-83835200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:83832200-83835400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr15:83832200-83835800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr15:83832200-83865600	Weak transcription	HSMM	muscle
23	chr15:83832600-83834400	Enhancers	NH-A	brain
24	chr15:83832600-83834600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:83832800-83834400	Flanking Active TSS	HUVEC	blood vessel
26	chr15:83832800-83835600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr15:83833000-83834600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:83833200-83834600	Enhancers	Dnd41	blood
29	chr15:83833400-83834400	Enhancers	Fetal Thymus	thymus
30	chr15:83833400-83834400	ZNF genes & repeats	A549	lung
31	chr15:83833600-83834400	ZNF genes & repeats	Fetal Lung	lung
32	chr15:83833600-83836000	Enhancers	K562	blood
33	chr15:83833800-83834400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:83833800-83834400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr15:83833800-83834400	ZNF genes & repeats	Fetal Muscle Leg	muscle
36	chr15:83833800-83834400	Enhancers	GM12878-XiMat	blood
37	chr15:83834000-83834400	Enhancers	Primary T cells from cord blood	blood
38	chr15:83834000-83834400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr15:83834000-83834400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr15:83834000-83860600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:83834200-83836000	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr15:83834200-83836400	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr15:83834200-83839000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:83834200-83842200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:83834200-83846800	Weak transcription	Osteobl	bone

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