Variant report

Variant	rs532002024
Chromosome Location	chr15:83622052-83622053
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr15:83621704-83622093	HEK293-T-REx	kidney:	n/a	chr15:83621913-83621934
2	NFIC	chr15:83621424-83622072	SK-N-SH	brain:	n/a	n/a
3	NRF1	chr15:83621137-83622158	SK-N-SH	brain:	n/a	chr15:83621260-83621269 chr15:83621249-83621258 chr15:83621337-83621346
4	NFIC	chr15:83620849-83622062	ECC-1	luminal epithelium:	n/a	n/a
5	NFIC	chr15:83621359-83622135	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83620495..83623262-chr15:83678706..83680302,2	MCF-7	breast:

Variant related genes	Relation type
HOMER2	TF binding region
ENSG00000169609	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv3361256	chr15:83620373-83622921	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3332267	chr15:83620548-83622646	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83619800-83622200	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr15:83620200-83622200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr15:83620200-83622200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:83620400-83622200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr15:83620600-83622200	Active TSS	H9 Cell Line	embryonic stem cell
6	chr15:83620600-83622200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr15:83620600-83622200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr15:83620600-83622200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
9	chr15:83620600-83622200	Active TSS	Colon Smooth Muscle	Colon
10	chr15:83620800-83622200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:83620800-83622200	Active TSS	Brain Cingulate Gyrus	brain
12	chr15:83621000-83622200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
13	chr15:83621000-83622200	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr15:83621000-83622400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:83621200-83622200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:83621600-83622200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:83621600-83622200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
18	chr15:83621600-83622200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr15:83621800-83622200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
20	chr15:83621800-83622200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr15:83621800-83622200	Flanking Active TSS	A549	lung
22	chr15:83622000-83622200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
23	chr15:83622000-83622200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
24	chr15:83622000-83622200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr15:83622000-83622200	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
26	chr15:83622000-83622200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
27	chr15:83622000-83622200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:83622000-83622200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:83622000-83622200	Enhancers	Brain Hippocampus Middle	brain
30	chr15:83622000-83622400	Enhancers	Pancreas	Pancrea
31	chr15:83622000-83622800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:83622000-83627000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:83622000-83627000	Weak transcription	Liver	Liver
34	chr15:83622000-83627000	Weak transcription	Gastric	stomach
35	chr15:83622000-83627000	Weak transcription	HMEC	breast
36	chr15:83622000-83629600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:83622000-83631200	Weak transcription	Spleen	Spleen
38	chr15:83622000-83635200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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