Variant report

Variant	rs3729878
Chromosome Location	chr7:106791447-106791448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:106587375..106588392-chr7:106790531..106792052,25	K562	blood:
2	chr7:106790159..106792080-chr7:106808485..106810265,2	MCF-7	breast:
3	chr7:106790717..106794481-chr7:106808251..106810689,4	MCF-7	breast:
4	chr7:106587499..106588599-chr7:106790528..106791712,8	MCF-7	breast:
5	chr7:106717147..106719450-chr7:106788638..106791468,2	K562	blood:
6	chr7:106433317..106434096-chr7:106790635..106791831,3	K562	blood:
7	chr7:106599895..106600883-chr7:106790614..106791583,4	K562	blood:
8	chr7:106785772..106788697-chr7:106791053..106792877,2	K562	blood:
9	chr7:106684077..106686070-chr7:106790309..106791811,2	K562	blood:
10	chr7:106531773..106532543-chr7:106790639..106791464,2	MCF-7	breast:
11	chr7:106646754..106649589-chr7:106791342..106793734,2	K562	blood:
12	chr7:106432310..106435136-chr7:106789858..106792528,2	K562	blood:
13	chr7:106791219..106793947-chr7:106800933..106803916,2	K562	blood:
14	chr7:106586596..106588761-chr7:106790457..106792904,2	K562	blood:
15	chr7:106587402..106588391-chr7:106790579..106791546,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000105856	Chromatin interaction
ENSG00000005249	Chromatin interaction
ENSG00000243193	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2536499	0.83[AMR][1000 genomes]
rs59153793	1.00[AMR][1000 genomes]
rs6955691	1.00[MEX][hapmap]
rs73415406	1.00[AMR][1000 genomes]
rs73415410	1.00[AMR][1000 genomes]
rs73415411	1.00[AMR][1000 genomes]
rs73415413	1.00[AMR][1000 genomes]
rs73415415	1.00[AMR][1000 genomes]
rs73415425	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106760400-106808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:106763000-106807800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:106767400-106797600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:106778400-106807800	Weak transcription	Brain Germinal Matrix	brain
5	chr7:106780000-106807800	Weak transcription	Fetal Heart	heart
6	chr7:106780200-106792000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:106780200-106792200	Weak transcription	Fetal Brain Female	brain
8	chr7:106782000-106795400	Weak transcription	Pancreas	Pancrea
9	chr7:106782600-106808000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:106782800-106807800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:106783600-106807600	Weak transcription	Fetal Stomach	stomach
12	chr7:106784200-106802600	Strong transcription	K562	blood
13	chr7:106785400-106808000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:106785800-106807600	Weak transcription	Fetal Kidney	kidney
15	chr7:106787400-106791800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:106787400-106792000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:106787400-106805800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:106788000-106805800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:106788000-106808000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr7:106788200-106807600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:106788400-106791800	Weak transcription	Adipose Nuclei	Adipose
22	chr7:106788400-106792000	Weak transcription	HMEC	breast
23	chr7:106788400-106792000	Weak transcription	NHDF-Ad	bronchial
24	chr7:106788400-106794000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:106788400-106808000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:106788600-106792000	Weak transcription	NH-A	brain
27	chr7:106788600-106805800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr7:106788800-106791800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr7:106788800-106792000	Weak transcription	NHLF	lung
30	chr7:106788800-106797200	Weak transcription	Placenta	Placenta
31	chr7:106788800-106797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr7:106788800-106805800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr7:106788800-106807200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:106788800-106807600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr7:106788800-106807800	Weak transcription	Ovary	ovary
36	chr7:106789000-106791800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:106789400-106808200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr7:106790000-106792600	Weak transcription	Hela-S3	cervix
39	chr7:106790000-106807200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr7:106790200-106792200	Weak transcription	Brain Angular Gyrus	brain
41	chr7:106790800-106797800	Weak transcription	Spleen	Spleen
42	chr7:106791000-106799400	Weak transcription	HUVEC	blood vessel
43	chr7:106791000-106805600	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr7:106791000-106806800	Weak transcription	Fetal Intestine Large	intestine
45	chr7:106791000-106807600	Weak transcription	Brain Anterior Caudate	brain
46	chr7:106791200-106795200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr7:106791200-106799400	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr7:106791200-106807800	Weak transcription	Rectal Mucosa Donor 31	rectum

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