Variant report

Variant	rs6955691
Chromosome Location	chr7:106772349-106772350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:106761889..106764464-chr7:106771416..106774166,2	MCF-7	breast:
2	chr7:106768254..106771092-chr7:106771784..106773738,2	K562	blood:
3	chr7:106769128..106772785-chr7:106778726..106781128,3	K562	blood:
4	chr15:65861121..65863713-chr7:106770992..106772890,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238715	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3729878	1.00[MEX][hapmap]
rs58273634	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106759800-106774000	Weak transcription	Left Ventricle	heart
2	chr7:106760200-106782000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:106760400-106808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:106763000-106807800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:106763400-106779000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:106764200-106779200	Weak transcription	Fetal Stomach	stomach
7	chr7:106765000-106779000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:106767400-106797600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:106767800-106782400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:106768400-106772400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:106769400-106774200	Strong transcription	K562	blood
12	chr7:106770000-106779600	Weak transcription	Adipose Nuclei	Adipose
13	chr7:106771200-106772800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr7:106771400-106773200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr7:106771600-106773200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:106771600-106774000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:106771800-106773000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr7:106771800-106773200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr7:106771800-106773200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr7:106772000-106772600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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