Variant report

Variant	rs3730003
Chromosome Location	chr7:150699160-150699161
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs3730002	1.00[AMR][1000 genomes]
rs3918178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3918180	1.00[AMR][1000 genomes]
rs3918187	1.00[AMR][1000 genomes]
rs3918191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3918192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41314384	1.00[AMR][1000 genomes]
rs41314390	1.00[AMR][1000 genomes]
rs41314396	1.00[AMR][1000 genomes]
rs45490891	1.00[AMR][1000 genomes]
rs6979425	1.00[AMR][1000 genomes]
rs73476760	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
4	nsv1022246	chr7:150619660-150779924	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv889463	chr7:150640285-150700946	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv889464	chr7:150640285-150723467	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv1017863	chr7:150643928-150779924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
9	nsv539197	chr7:150643928-150779924	Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
10	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
11	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
12	nsv889467	chr7:150645534-150723467	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	nsv889469	chr7:150657209-150747746	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150692200-150700800	Weak transcription	Gastric	stomach
2	chr7:150692200-150705000	Weak transcription	Ovary	ovary
3	chr7:150692400-150704200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:150692400-150704400	Weak transcription	Right Atrium	heart
5	chr7:150692600-150704000	Weak transcription	Left Ventricle	heart
6	chr7:150694200-150699600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:150694400-150704400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:150694600-150700200	Weak transcription	Fetal Brain Female	brain
9	chr7:150694600-150705600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:150694800-150704800	Weak transcription	Fetal Lung	lung
11	chr7:150694800-150705200	Weak transcription	Fetal Intestine Small	intestine
12	chr7:150695000-150705400	Weak transcription	Fetal Intestine Large	intestine
13	chr7:150695600-150704600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:150696400-150699400	Strong transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:150697000-150701000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr7:150697000-150704000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr7:150697400-150699200	Genic enhancers	Spleen	Spleen
18	chr7:150697400-150699400	Strong transcription	HUVEC	blood vessel
19	chr7:150697600-150699200	Strong transcription	Right Ventricle	heart
20	chr7:150697600-150699400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr7:150697600-150700000	Strong transcription	Adipose Nuclei	Adipose
22	chr7:150697600-150701400	Genic enhancers	Placenta	Placenta
23	chr7:150697600-150703800	Weak transcription	Primary T cells from cord blood	blood
24	chr7:150697800-150699800	Strong transcription	Lung	lung
25	chr7:150697800-150703600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr7:150697800-150704400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr7:150698200-150703800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr7:150698200-150704000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr7:150698200-150704000	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr7:150698200-150704200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:150698400-150699800	Weak transcription	K562	blood
32	chr7:150698400-150703800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:150698800-150699400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr7:150698800-150699800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr7:150698800-150700200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr7:150699000-150699400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr7:150699000-150699400	Enhancers	HMEC	breast
38	chr7:150699000-150699400	Enhancers	NHEK	skin
39	chr7:150699000-150699800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:150699000-150703600	Weak transcription	Primary T cells fromperipheralblood	blood

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