Variant report

Variant	rs45490891
Chromosome Location	chr7:150549817-150549818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs3730002	1.00[AMR][1000 genomes]
rs3730003	1.00[AMR][1000 genomes]
rs3918178	1.00[AMR][1000 genomes]
rs3918180	1.00[AMR][1000 genomes]
rs3918187	1.00[AMR][1000 genomes]
rs3918191	1.00[AMR][1000 genomes]
rs3918192	1.00[AMR][1000 genomes]
rs41314384	1.00[AMR][1000 genomes]
rs41314390	1.00[AMR][1000 genomes]
rs41314396	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2758140	chr7:150538821-150663697	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv2759574	chr7:150538821-150663697	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv1031497	chr7:150547113-150572570	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1029395	chr7:150547113-150574552	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150539600-150553800	Weak transcription	Liver	Liver
2	chr7:150543200-150551200	Weak transcription	Fetal Lung	lung
3	chr7:150543200-150557600	Weak transcription	Right Atrium	heart
4	chr7:150548400-150550000	Enhancers	Primary hematopoietic stem cells	blood
5	chr7:150548600-150550000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
6	chr7:150548600-150550400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:150549000-150550000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr7:150549400-150550000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:150549400-150550000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
10	chr7:150549400-150550000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:150549400-150550000	Enhancers	Fetal Muscle Leg	muscle
12	chr7:150549400-150550000	Active TSS	Stomach Mucosa	stomach
13	chr7:150549400-150550600	Active TSS	Fetal Intestine Large	intestine
14	chr7:150549400-150550600	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr7:150549400-150551200	Active TSS	Duodenum Mucosa	Duodenum
16	chr7:150549600-150550000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:150549600-150550000	Enhancers	Placenta	Placenta
18	chr7:150549600-150550400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
19	chr7:150549600-150550400	Active TSS	Fetal Kidney	kidney
20	chr7:150549600-150550400	Active TSS	Rectal Mucosa Donor 31	rectum
21	chr7:150549600-150550400	Active TSS	Rectal Smooth Muscle	rectum
22	chr7:150549600-150550600	Active TSS	Fetal Intestine Small	intestine
23	chr7:150549600-150553600	Weak transcription	Spleen	Spleen
24	chr7:150549800-150550000	Enhancers	Lung	lung
25	chr7:150549800-150550000	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr7:150549800-150550200	Active TSS	Colonic Mucosa	Colon
27	chr7:150549800-150550200	Active TSS	Sigmoid Colon	Sigmoid Colon
28	chr7:150549800-150550200	Bivalent/Poised TSS	Small Intestine	intestine
29	chr7:150549800-150557400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr7:150549800-150558400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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