Variant report

Variant	rs3732513
Chromosome Location	chr3:56674303-56674304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56672511..56675484-chr3:56675604..56678156,3	K562	blood:
2	chr3:56668549..56671040-chr3:56673314..56676261,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10865997	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11719726	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12486047	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12496217	0.85[EUR][1000 genomes]
rs12631156	0.84[ASN][1000 genomes]
rs2291498	0.82[AFR][1000 genomes]
rs282524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs282526	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs282532	0.83[ASN][1000 genomes]
rs282533	0.83[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs282534	0.84[ASN][1000 genomes]
rs282537	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs282538	0.84[ASN][1000 genomes]
rs282539	0.83[ASN][1000 genomes]
rs282543	0.83[ASN][1000 genomes]
rs4681937	0.82[AFR][1000 genomes]
rs4681955	0.81[AFR][1000 genomes]
rs4974218	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4974222	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55742226	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs55810735	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6445811	0.81[AFR][1000 genomes]
rs6445812	0.81[AFR][1000 genomes]
rs66873962	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6769055	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7639731	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7640995	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9311609	0.81[AFR][1000 genomes]
rs955248	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9816100	0.81[AFR][1000 genomes]
rs9819952	0.81[AFR][1000 genomes]
rs9822876	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs9823685	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9834064	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9834239	0.81[AMR][1000 genomes]
rs9864701	0.81[AFR][1000 genomes]
rs9867302	0.81[AFR][1000 genomes]
rs9868059	0.82[AFR][1000 genomes]
rs9873754	0.84[EUR][1000 genomes]
rs9985317	0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3732513	CCDC66	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56640800-56695400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:56642800-56713400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56644400-56686400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:56644800-56708200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr3:56645400-56705200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:56647400-56707400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr3:56647400-56707800	Strong transcription	Fetal Thymus	thymus
8	chr3:56651400-56702000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr3:56652800-56701400	Weak transcription	Psoas Muscle	Psoas
10	chr3:56656200-56683000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:56657400-56683800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:56657600-56675800	Strong transcription	Fetal Muscle Leg	muscle
13	chr3:56657800-56678000	Weak transcription	Fetal Brain Male	brain
14	chr3:56659400-56676200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:56661400-56710600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:56661800-56674800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:56664000-56688000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:56664000-56694800	Weak transcription	Stomach Mucosa	stomach
19	chr3:56664800-56687400	Strong transcription	Primary B cells from peripheral blood	blood
20	chr3:56664800-56711000	Strong transcription	Dnd41	blood
21	chr3:56665000-56687800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:56665000-56690400	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:56665000-56707800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr3:56665200-56686600	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:56665200-56691800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr3:56665200-56698800	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr3:56665200-56707200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:56665400-56675200	Weak transcription	Pancreas	Pancrea
29	chr3:56665400-56683200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr3:56665400-56687000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:56665600-56676200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr3:56665800-56687400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:56665800-56687400	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr3:56666000-56675800	Strong transcription	Primary T cells from cord blood	blood
35	chr3:56666000-56686800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr3:56666200-56708000	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr3:56666600-56675600	Strong transcription	Hela-S3	cervix
38	chr3:56666600-56676600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:56666800-56675800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:56666800-56675800	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr3:56667000-56675200	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr3:56667000-56684400	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr3:56668000-56674600	Weak transcription	Esophagus	oesophagus
44	chr3:56668000-56674800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr3:56668000-56675400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr3:56668000-56675400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr3:56668000-56680400	Weak transcription	NHEK	skin
48	chr3:56668000-56688600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr3:56668000-56707200	Strong transcription	Placenta	Placenta
50	chr3:56668400-56674400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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