Variant report

Variant	rs7640995
Chromosome Location	chr3:56677878-56677879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56672511..56675484-chr3:56675604..56678156,3	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10865997	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11719726	0.81[AFR][1000 genomes]
rs12486047	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12496217	0.81[EUR][1000 genomes]
rs12631156	0.84[ASN][1000 genomes]
rs1316647	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13317989	0.82[AMR][1000 genomes]
rs2291498	0.81[AFR][1000 genomes]
rs282524	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs282526	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs282532	0.83[ASN][1000 genomes]
rs282533	0.85[ASN][1000 genomes]
rs282534	0.84[ASN][1000 genomes]
rs282537	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs282538	0.84[ASN][1000 genomes]
rs282539	0.83[ASN][1000 genomes]
rs282543	0.83[ASN][1000 genomes]
rs3732513	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4681726	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4681937	0.81[AFR][1000 genomes]
rs4681955	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4974218	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974222	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55742226	0.81[AFR][1000 genomes]
rs55810735	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6445811	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6445812	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs66873962	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6767903	0.82[AMR][1000 genomes]
rs6769055	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7612464	0.82[AMR][1000 genomes]
rs7633478	0.82[AMR][1000 genomes]
rs7639731	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7649872	0.81[AFR][1000 genomes]
rs9311609	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs953540	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs955248	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9809117	0.82[AMR][1000 genomes]
rs9816100	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9816265	0.82[AMR][1000 genomes]
rs9819952	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9823685	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9830377	0.82[AMR][1000 genomes]
rs9834064	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9834239	0.84[AMR][1000 genomes]
rs9847362	0.82[AMR][1000 genomes]
rs9861577	0.82[AMR][1000 genomes]
rs9864701	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9867302	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9868059	0.81[AFR][1000 genomes]
rs9871265	0.82[AMR][1000 genomes]
rs9872059	0.82[AMR][1000 genomes]
rs9883842	0.82[AMR][1000 genomes]
rs9985317	0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7640995	CCDC66	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56640800-56695400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:56642800-56713400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56644400-56686400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:56644800-56708200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr3:56645400-56705200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:56647400-56707400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr3:56647400-56707800	Strong transcription	Fetal Thymus	thymus
8	chr3:56651400-56702000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr3:56652800-56701400	Weak transcription	Psoas Muscle	Psoas
10	chr3:56656200-56683000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:56657400-56683800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:56657800-56678000	Weak transcription	Fetal Brain Male	brain
13	chr3:56661400-56710600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:56664000-56688000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:56664000-56694800	Weak transcription	Stomach Mucosa	stomach
16	chr3:56664800-56687400	Strong transcription	Primary B cells from peripheral blood	blood
17	chr3:56664800-56711000	Strong transcription	Dnd41	blood
18	chr3:56665000-56687800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr3:56665000-56690400	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr3:56665000-56707800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:56665200-56686600	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr3:56665200-56691800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:56665200-56698800	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr3:56665200-56707200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:56665400-56683200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:56665400-56687000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:56665800-56687400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:56665800-56687400	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr3:56666000-56686800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr3:56666200-56708000	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr3:56667000-56684400	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr3:56668000-56680400	Weak transcription	NHEK	skin
33	chr3:56668000-56688600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr3:56668000-56707200	Strong transcription	Placenta	Placenta
35	chr3:56669200-56686400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr3:56669600-56703800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:56670000-56687000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr3:56670200-56682200	Strong transcription	Stomach Smooth Muscle	stomach
39	chr3:56670600-56679000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:56670600-56687000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr3:56670800-56682400	Strong transcription	Liver	Liver
42	chr3:56670800-56682400	Strong transcription	HepG2	liver
43	chr3:56670800-56687000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr3:56672400-56682200	Strong transcription	Osteobl	bone
45	chr3:56672600-56686600	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr3:56673600-56687600	Strong transcription	GM12878-XiMat	blood
47	chr3:56674800-56678000	Strong transcription	Fetal Stomach	stomach
48	chr3:56675400-56678200	Weak transcription	Fetal Heart	heart
49	chr3:56675600-56678400	Weak transcription	Brain Hippocampus Middle	brain
50	chr3:56675600-56678400	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links